Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MTCYBP20-201ENST00000524239 1129 ntBASIC2.82□□□□□ -1.96
CCDC88AQ3V6T2 AC068339.2-201ENST00000534395 618 ntBASIC2.82□□□□□ -1.96
CCDC88AQ3V6T2 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.82□□□□□ -1.96
CCDC88AQ3V6T2 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC2.82□□□□□ -1.96
CCDC88AQ3V6T2 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC2.82□□□□□ -1.96
CCDC88AQ3V6T2 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
CCDC88AQ3V6T2 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
CCDC88AQ3V6T2 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
CCDC88AQ3V6T2 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
CCDC88AQ3V6T2 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
CCDC88AQ3V6T2 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
CCDC88AQ3V6T2 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC2.81□□□□□ -1.96
CCDC88AQ3V6T2 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC2.81□□□□□ -1.96
CCDC88AQ3V6T2 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.81□□□□□ -1.96
CCDC88AQ3V6T2 AC010683.1-201ENST00000473673 378 ntBASIC2.81□□□□□ -1.96
CCDC88AQ3V6T2 AC021087.2-201ENST00000504656 1203 ntBASIC2.81□□□□□ -1.96
CCDC88AQ3V6T2 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC2.81□□□□□ -1.96
CCDC88AQ3V6T2 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
CCDC88AQ3V6T2 AC005951.1-201ENST00000576706 485 ntBASIC2.81□□□□□ -1.96
CCDC88AQ3V6T2 AC023043.2-201ENST00000589678 1026 ntBASIC2.81□□□□□ -1.96
CCDC88AQ3V6T2 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC2.81□□□□□ -1.96
CCDC88AQ3V6T2 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.81□□□□□ -1.96
CCDC88AQ3V6T2 MIR219B-201ENST00000637023 88 ntBASIC2.81□□□□□ -1.96
CCDC88AQ3V6T2 CUL1P1-201ENST00000509510 2425 ntBASIC2.81□□□□□ -1.96
CCDC88AQ3V6T2 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.81□□□□□ -1.96
CCDC88AQ3V6T2 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
CCDC88AQ3V6T2 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
CCDC88AQ3V6T2 RNA5SP456-201ENST00000364002 114 ntBASIC2.8□□□□□ -1.96
CCDC88AQ3V6T2 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC88AQ3V6T2 AC092832.1-201ENST00000422934 400 ntBASIC2.8□□□□□ -1.96
CCDC88AQ3V6T2 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC2.8□□□□□ -1.96
CCDC88AQ3V6T2 AC091179.1-201ENST00000461606 579 ntBASIC2.8□□□□□ -1.96
CCDC88AQ3V6T2 AL024509.2-201ENST00000493462 493 ntBASIC2.8□□□□□ -1.96
CCDC88AQ3V6T2 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC2.8□□□□□ -1.96
CCDC88AQ3V6T2 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC88AQ3V6T2 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC88AQ3V6T2 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC2.8□□□□□ -1.96
CCDC88AQ3V6T2 AL137847.3-201ENST00000611521 109 ntBASIC2.8□□□□□ -1.96
CCDC88AQ3V6T2 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 NPM1P49-201ENST00000448027 714 ntBASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 OR6C72P-201ENST00000451403 892 ntBASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 SNORD108-201ENST00000459332 71 ntBASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 AC023050.1-201ENST00000498198 304 ntBASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 AC113398.2-201ENST00000507630 558 ntBASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 RNU6-347P-201ENST00000516658 105 ntBASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 AC006270.2-201ENST00000578523 652 ntBASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 AC010615.3-201ENST00000597319 394 ntBASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 ABI1P1-201ENST00000603375 1120 ntBASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 AC018754.1-201ENST00000607486 925 ntBASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 DCAF13P3-201ENST00000561147 1334 ntBASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 U8.9-201ENST00000365667 134 ntBASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 MTCYBP14-201ENST00000457471 715 ntBASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 SCARNA17.1-201ENST00000516211 143 ntBASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 SCARNA17.2-201ENST00000516334 143 ntBASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 AL161713.1-201ENST00000555538 145 ntBASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 SCARNA17.4-201ENST00000614296 143 ntBASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 AL356266.1-201ENST00000623311 483 ntBASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 AC092159.4-201ENST00000624944 550 ntBASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 MTND5P28-201ENST00000438005 1594 ntBASIC2.79□□□□□ -1.96
CCDC88AQ3V6T2 AC022336.2-201ENST00000568966 2538 ntBASIC2.78□□□□□ -1.96
CCDC88AQ3V6T2 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
CCDC88AQ3V6T2 AL139156.1-201ENST00000412785 841 ntBASIC2.78□□□□□ -1.96
CCDC88AQ3V6T2 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC2.78□□□□□ -1.96
CCDC88AQ3V6T2 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.78□□□□□ -1.96
CCDC88AQ3V6T2 NFU1-207ENST00000462320 558 ntTSL 4 BASIC2.78□□□□□ -1.96
CCDC88AQ3V6T2 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC2.78□□□□□ -1.96
CCDC88AQ3V6T2 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC2.78□□□□□ -1.96
CCDC88AQ3V6T2 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
CCDC88AQ3V6T2 AC123904.3-201ENST00000547218 814 ntBASIC2.78□□□□□ -1.96
CCDC88AQ3V6T2 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC2.78□□□□□ -1.96
CCDC88AQ3V6T2 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC2.78□□□□□ -1.96
CCDC88AQ3V6T2 AL451074.6-201ENST00000608512 729 ntBASIC2.78□□□□□ -1.96
CCDC88AQ3V6T2 SEPT7P7-201ENST00000420492 1301 ntBASIC2.78□□□□□ -1.96
CCDC88AQ3V6T2 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC2.78□□□□□ -1.96
CCDC88AQ3V6T2 AC006378.2-201ENST00000623178 2476 ntBASIC2.78□□□□□ -1.96
CCDC88AQ3V6T2 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
CCDC88AQ3V6T2 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
CCDC88AQ3V6T2 MIR6073-201ENST00000352083 89 ntBASIC2.77□□□□□ -1.97
CCDC88AQ3V6T2 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
CCDC88AQ3V6T2 MIR1287-201ENST00000408492 90 ntBASIC2.77□□□□□ -1.97
CCDC88AQ3V6T2 AC000367.1-201ENST00000452711 1766 ntBASIC2.77□□□□□ -1.97
CCDC88AQ3V6T2 RAD51AP1P1-201ENST00000484195 1001 ntBASIC2.77□□□□□ -1.97
CCDC88AQ3V6T2 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.77□□□□□ -1.97
CCDC88AQ3V6T2 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC2.77□□□□□ -1.97
CCDC88AQ3V6T2 MIR1291-201ENST00000627649 87 ntBASIC2.77□□□□□ -1.97
CCDC88AQ3V6T2 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms