Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.38□□□□□ -1.55
SOX4Q06945 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC5.38□□□□□ -1.55
SOX4Q06945 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC5.38□□□□□ -1.55
SOX4Q06945 MIR133A2-201ENST00000347538 102 ntBASIC5.38□□□□□ -1.55
SOX4Q06945 Y_RNA.212-201ENST00000364177 102 ntBASIC5.38□□□□□ -1.55
SOX4Q06945 SET-203ENST00000372688 801 ntTSL 2 BASIC5.38□□□□□ -1.55
SOX4Q06945 UBE2V1P2-201ENST00000397758 440 ntBASIC5.38□□□□□ -1.55
SOX4Q06945 Y_RNA.646-201ENST00000410980 101 ntBASIC5.38□□□□□ -1.55
SOX4Q06945 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC5.38□□□□□ -1.55
SOX4Q06945 PSMA6P3-201ENST00000428242 164 ntBASIC5.38□□□□□ -1.55
SOX4Q06945 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC5.38□□□□□ -1.55
SOX4Q06945 RPL21P23-201ENST00000446654 460 ntBASIC5.38□□□□□ -1.55
SOX4Q06945 AL136126.1-201ENST00000473603 402 ntBASIC5.38□□□□□ -1.55
SOX4Q06945 RPS23P1-201ENST00000491662 432 ntBASIC5.38□□□□□ -1.55
SOX4Q06945 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC5.38□□□□□ -1.55
SOX4Q06945 AC098976.1-201ENST00000513014 541 ntBASIC5.38□□□□□ -1.55
SOX4Q06945 RNU7-51P-201ENST00000516560 62 ntBASIC5.38□□□□□ -1.55
SOX4Q06945 RNU6-1213P-201ENST00000517075 94 ntBASIC5.38□□□□□ -1.55
SOX4Q06945 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC5.38□□□□□ -1.55
SOX4Q06945 AC068993.1-201ENST00000546724 589 ntBASIC5.38□□□□□ -1.55
SOX4Q06945 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC5.38□□□□□ -1.55
SOX4Q06945 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC5.38□□□□□ -1.55
SOX4Q06945 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC5.38□□□□□ -1.55
SOX4Q06945 AC138761.3-201ENST00000579993 334 ntBASIC5.38□□□□□ -1.55
SOX4Q06945 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
SOX4Q06945 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
SOX4Q06945 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC5.38□□□□□ -1.55
SOX4Q06945 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC5.38□□□□□ -1.55
SOX4Q06945 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC5.38□□□□□ -1.55
SOX4Q06945 AC098657.3-201ENST00000620434 263 ntBASIC5.38□□□□□ -1.55
SOX4Q06945 AC011155.2-201ENST00000623202 216 ntBASIC5.38□□□□□ -1.55
SOX4Q06945 U6.114-201ENST00000636407 96 ntBASIC5.38□□□□□ -1.55
SOX4Q06945 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.38□□□□□ -1.55
SOX4Q06945 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SOX4Q06945 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SOX4Q06945 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SOX4Q06945 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC5.38□□□□□ -1.55
SOX4Q06945 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.38□□□□□ -1.55
SOX4Q06945 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.38□□□□□ -1.55
SOX4Q06945 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.37□□□□□ -1.55
SOX4Q06945 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SOX4Q06945 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.37□□□□□ -1.55
SOX4Q06945 MFF-206ENST00000392059 1710 ntTSL 5 BASIC5.37□□□□□ -1.55
SOX4Q06945 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC5.37□□□□□ -1.55
SOX4Q06945 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
SOX4Q06945 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
SOX4Q06945 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
SOX4Q06945 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
SOX4Q06945 RNA5SP191-201ENST00000362585 102 ntBASIC5.37□□□□□ -1.55
SOX4Q06945 Y_RNA.364-201ENST00000365532 101 ntBASIC5.37□□□□□ -1.55
SOX4Q06945 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC5.37□□□□□ -1.55
SOX4Q06945 OFD1P1Y-201ENST00000411756 1225 ntBASIC5.37□□□□□ -1.55
SOX4Q06945 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC5.37□□□□□ -1.55
SOX4Q06945 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC5.37□□□□□ -1.55
SOX4Q06945 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC5.37□□□□□ -1.55
SOX4Q06945 AL451139.1-201ENST00000434718 346 ntBASIC5.37□□□□□ -1.55
SOX4Q06945 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC5.37□□□□□ -1.55
SOX4Q06945 AL450023.3-201ENST00000440592 271 ntBASIC5.37□□□□□ -1.55
SOX4Q06945 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC5.37□□□□□ -1.55
SOX4Q06945 RPL23AP43-201ENST00000446445 471 ntBASIC5.37□□□□□ -1.55
SOX4Q06945 MTND1P17-201ENST00000448961 204 ntBASIC5.37□□□□□ -1.55
SOX4Q06945 SUMO1P2-201ENST00000452524 304 ntBASIC5.37□□□□□ -1.55
SOX4Q06945 AC091180.1-201ENST00000462104 372 ntBASIC5.37□□□□□ -1.55
SOX4Q06945 AC004801.2-202ENST00000463559 283 ntBASIC5.37□□□□□ -1.55
SOX4Q06945 AC090602.1-201ENST00000469695 252 ntBASIC5.37□□□□□ -1.55
SOX4Q06945 AC015911.1-201ENST00000495111 156 ntBASIC5.37□□□□□ -1.55
SOX4Q06945 AC068305.1-201ENST00000497406 726 ntBASIC5.37□□□□□ -1.55
SOX4Q06945 AC093767.1-201ENST00000504523 156 ntBASIC5.37□□□□□ -1.55
SOX4Q06945 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC5.37□□□□□ -1.55
SOX4Q06945 AC093853.1-201ENST00000515689 483 ntBASIC5.37□□□□□ -1.55
SOX4Q06945 AL671862.1-201ENST00000515851 349 ntBASIC5.37□□□□□ -1.55
SOX4Q06945 RNU2-10P-201ENST00000516375 211 ntBASIC5.37□□□□□ -1.55
SOX4Q06945 AP005902.1-201ENST00000521358 186 ntBASIC5.37□□□□□ -1.55
SOX4Q06945 DEFB109D-201ENST00000529497 240 ntBASIC5.37□□□□□ -1.55
SOX4Q06945 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC5.37□□□□□ -1.55
SOX4Q06945 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC5.37□□□□□ -1.55
SOX4Q06945 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SOX4Q06945 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC5.37□□□□□ -1.55
SOX4Q06945 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC5.37□□□□□ -1.55
SOX4Q06945 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC5.37□□□□□ -1.55
SOX4Q06945 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC5.37□□□□□ -1.55
SOX4Q06945 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC5.37□□□□□ -1.55
SOX4Q06945 NAA50-211ENST00000630058 177 ntTSL 5 BASIC5.37□□□□□ -1.55
SOX4Q06945 AC008013.2-202ENST00000637965 364 ntBASIC5.37□□□□□ -1.55
SOX4Q06945 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC5.37□□□□□ -1.55
SOX4Q06945 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
SOX4Q06945 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SOX4Q06945 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SOX4Q06945 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.37□□□□□ -1.55
SOX4Q06945 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
SOX4Q06945 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SOX4Q06945 AC006484.1-201ENST00000435086 1884 ntBASIC5.37□□□□□ -1.55
SOX4Q06945 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
SOX4Q06945 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SOX4Q06945 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC5.36□□□□□ -1.55
SOX4Q06945 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SOX4Q06945 OR9K1P-202ENST00000641111 3217 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SOX4Q06945 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC5.36□□□□□ -1.55
SOX4Q06945 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms