Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC3.63□□□□□ -1.83
HNF4AP41235 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC3.63□□□□□ -1.83
HNF4AP41235 COX7A2P2-201ENST00000505291 250 ntBASIC3.63□□□□□ -1.83
HNF4AP41235 AC117522.2-201ENST00000510049 657 ntBASIC3.63□□□□□ -1.83
HNF4AP41235 AC093853.1-201ENST00000515689 483 ntBASIC3.63□□□□□ -1.83
HNF4AP41235 RN7SKP83-201ENST00000516512 178 ntBASIC3.63□□□□□ -1.83
HNF4AP41235 SCARNA14-201ENST00000516903 136 ntBASIC3.63□□□□□ -1.83
HNF4AP41235 RNU6-1231P-201ENST00000517185 103 ntBASIC3.63□□□□□ -1.83
HNF4AP41235 RNU6-711P-201ENST00000517255 106 ntBASIC3.63□□□□□ -1.83
HNF4AP41235 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC3.63□□□□□ -1.83
HNF4AP41235 AP000926.4-201ENST00000527351 454 ntBASIC3.63□□□□□ -1.83
HNF4AP41235 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.63□□□□□ -1.83
HNF4AP41235 ERP27-202ENST00000540097 993 ntTSL 2 BASIC3.63□□□□□ -1.83
HNF4AP41235 NBEAP1-201ENST00000554452 979 ntBASIC3.63□□□□□ -1.83
HNF4AP41235 MED28P6-201ENST00000558776 231 ntBASIC3.63□□□□□ -1.83
HNF4AP41235 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.63□□□□□ -1.83
HNF4AP41235 AL031176.1-201ENST00000604554 466 ntBASIC3.63□□□□□ -1.83
HNF4AP41235 SNORA51-201ENST00000606420 132 ntBASIC3.63□□□□□ -1.83
HNF4AP41235 AC080013.4-201ENST00000607624 649 ntBASIC3.63□□□□□ -1.83
HNF4AP41235 AC006111.3-201ENST00000622137 383 ntBASIC3.63□□□□□ -1.83
HNF4AP41235 AC120349.2-201ENST00000625002 298 ntBASIC3.63□□□□□ -1.83
HNF4AP41235 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC3.63□□□□□ -1.83
HNF4AP41235 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
HNF4AP41235 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.63□□□□□ -1.83
HNF4AP41235 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
HNF4AP41235 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HNF4AP41235 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HNF4AP41235 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HNF4AP41235 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HNF4AP41235 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.62□□□□□ -1.83
HNF4AP41235 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HNF4AP41235 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.62□□□□□ -1.83
HNF4AP41235 CEP170P1-201ENST00000502249 4587 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.62□□□□□ -1.83
HNF4AP41235 CDR1-202ENST00000625883 1485 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.62□□□□□ -1.83
HNF4AP41235 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.62□□□□□ -1.83
HNF4AP41235 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.62□□□□□ -1.83
HNF4AP41235 MFSD8-236ENST00000641509 4050 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HNF4AP41235 SNRPEP3-201ENST00000338402 276 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
HNF4AP41235 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
HNF4AP41235 RN7SKP280-201ENST00000364196 304 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.62□□□□□ -1.83
HNF4AP41235 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
HNF4AP41235 Y_RNA.465-201ENST00000384293 102 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 RPL32P23-201ENST00000397237 405 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 AL136372.1-201ENST00000403060 228 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 RNU6-1077P-201ENST00000410506 102 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 RNU2-42P-201ENST00000410697 113 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 AC009518.2-201ENST00000418056 731 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 AL365338.1-201ENST00000422282 858 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HNF4AP41235 USP9YP11-201ENST00000427537 717 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.62□□□□□ -1.83
HNF4AP41235 EZH2P1-201ENST00000431167 291 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 MTND1P32-201ENST00000433043 938 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC3.62□□□□□ -1.83
HNF4AP41235 AL133217.1-201ENST00000450980 425 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 NANOGP10-201ENST00000453325 895 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC3.62□□□□□ -1.83
HNF4AP41235 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.62□□□□□ -1.83
HNF4AP41235 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.62□□□□□ -1.83
HNF4AP41235 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC3.62□□□□□ -1.83
HNF4AP41235 BET1P1-201ENST00000482276 359 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 RPS3AP22-201ENST00000488297 769 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.62□□□□□ -1.83
HNF4AP41235 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.62□□□□□ -1.83
HNF4AP41235 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC3.62□□□□□ -1.83
HNF4AP41235 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC3.62□□□□□ -1.83
HNF4AP41235 RNU6-1129P-201ENST00000515964 104 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 Y_RNA.688-201ENST00000516565 95 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 AC104986.1-201ENST00000517978 436 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 IGHV3-76-201ENST00000522465 295 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC3.62□□□□□ -1.83
HNF4AP41235 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC3.62□□□□□ -1.83
HNF4AP41235 AC024224.1-201ENST00000538284 609 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 AL121766.1-201ENST00000547436 487 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC3.62□□□□□ -1.83
HNF4AP41235 AC106785.1-201ENST00000565935 262 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.62□□□□□ -1.83
HNF4AP41235 MIR4637-201ENST00000582405 84 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.62□□□□□ -1.83
HNF4AP41235 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.62□□□□□ -1.83
HNF4AP41235 AL020997.2-201ENST00000602607 184 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 AL022099.1-201ENST00000604551 712 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 AC106900.2-201ENST00000604994 317 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 AC012443.1-201ENST00000605605 231 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 AC018638.7-201ENST00000605836 1114 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 AL360219.1-201ENST00000610230 366 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 AC079684.1-201ENST00000621405 437 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 AC131159.1-201ENST00000621854 213 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 AC026422.1-201ENST00000623961 452 ntBASIC3.62□□□□□ -1.83
HNF4AP41235 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.62□□□□□ -1.83
HNF4AP41235 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.62□□□□□ -1.83
HNF4AP41235 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.62□□□□□ -1.83
HNF4AP41235 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HNF4AP41235 CR381670.1-201ENST00000624291 1693 ntBASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 134 ms