Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC3.38□□□□□ -1.87
CUX1P39880 SDR42E1P3-201ENST00000438345 502 ntBASIC3.38□□□□□ -1.87
CUX1P39880 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC3.38□□□□□ -1.87
CUX1P39880 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC3.38□□□□□ -1.87
CUX1P39880 AC090819.1-201ENST00000523800 1111 ntBASIC3.38□□□□□ -1.87
CUX1P39880 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.38□□□□□ -1.87
CUX1P39880 AC091834.1-201ENST00000614543 472 ntBASIC3.38□□□□□ -1.87
CUX1P39880 AC067852.7-201ENST00000623270 535 ntBASIC3.38□□□□□ -1.87
CUX1P39880 RNU6-457P-201ENST00000363999 107 ntBASIC3.37□□□□□ -1.87
CUX1P39880 RWDD4P2-201ENST00000426392 563 ntBASIC3.37□□□□□ -1.87
CUX1P39880 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.37□□□□□ -1.87
CUX1P39880 AL445669.2-201ENST00000454425 421 ntBASIC3.37□□□□□ -1.87
CUX1P39880 AC233279.1-201ENST00000455300 423 ntBASIC3.37□□□□□ -1.87
CUX1P39880 SNRPGP9-201ENST00000456025 225 ntBASIC3.37□□□□□ -1.87
CUX1P39880 RWDD4P1-201ENST00000488019 565 ntBASIC3.37□□□□□ -1.87
CUX1P39880 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CUX1P39880 SNRPGP19-201ENST00000603826 189 ntBASIC3.37□□□□□ -1.87
CUX1P39880 AC128687.1-201ENST00000605304 619 ntBASIC3.37□□□□□ -1.87
CUX1P39880 AC244517.12-201ENST00000623581 663 ntBASIC3.37□□□□□ -1.87
CUX1P39880 AP002967.1-201ENST00000624203 539 ntBASIC3.37□□□□□ -1.87
CUX1P39880 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.36□□□□□ -1.87
CUX1P39880 EXOC5P1-201ENST00000510543 1969 ntBASIC3.36□□□□□ -1.87
CUX1P39880 OR4K11P-201ENST00000431829 904 ntBASIC3.36□□□□□ -1.87
CUX1P39880 AL591719.1-201ENST00000444669 744 ntBASIC3.36□□□□□ -1.87
CUX1P39880 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC3.36□□□□□ -1.87
CUX1P39880 AP000889.2-201ENST00000532684 490 ntBASIC3.36□□□□□ -1.87
CUX1P39880 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
CUX1P39880 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.36□□□□□ -1.87
CUX1P39880 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC3.36□□□□□ -1.87
CUX1P39880 AC073387.2-201ENST00000604797 784 ntBASIC3.36□□□□□ -1.87
CUX1P39880 AL137847.3-201ENST00000611521 109 ntBASIC3.36□□□□□ -1.87
CUX1P39880 RNY1P10-201ENST00000363268 113 ntBASIC3.35□□□□□ -1.87
CUX1P39880 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CUX1P39880 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC3.35□□□□□ -1.87
CUX1P39880 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC3.35□□□□□ -1.87
CUX1P39880 NDUFB4P6-201ENST00000436819 366 ntBASIC3.35□□□□□ -1.87
CUX1P39880 AL049830.2-201ENST00000480072 201 ntBASIC3.35□□□□□ -1.87
CUX1P39880 MIR3670-2-201ENST00000582974 65 ntBASIC3.35□□□□□ -1.87
CUX1P39880 MIR3670-1-201ENST00000584160 65 ntBASIC3.35□□□□□ -1.87
CUX1P39880 MIR3670-3-201ENST00000584855 65 ntBASIC3.35□□□□□ -1.87
CUX1P39880 RPAP2P1-201ENST00000603626 1168 ntBASIC3.35□□□□□ -1.87
CUX1P39880 AC099778.2-201ENST00000610904 211 ntBASIC3.35□□□□□ -1.87
CUX1P39880 MIR3670-4-201ENST00000612260 65 ntBASIC3.35□□□□□ -1.87
CUX1P39880 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC3.35□□□□□ -1.87
CUX1P39880 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.35□□□□□ -1.87
CUX1P39880 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.35□□□□□ -1.87
CUX1P39880 AP005901.5-201ENST00000545779 1796 ntBASIC3.35□□□□□ -1.87
CUX1P39880 DHFRP5-201ENST00000406944 564 ntBASIC3.34□□□□□ -1.87
CUX1P39880 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC3.34□□□□□ -1.87
CUX1P39880 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CUX1P39880 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC3.34□□□□□ -1.87
CUX1P39880 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.34□□□□□ -1.87
CUX1P39880 AP000852.1-201ENST00000472460 573 ntBASIC3.34□□□□□ -1.87
CUX1P39880 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC3.34□□□□□ -1.87
CUX1P39880 RNU6-826P-201ENST00000516827 104 ntBASIC3.34□□□□□ -1.87
CUX1P39880 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC3.34□□□□□ -1.87
CUX1P39880 AC007536.1-201ENST00000533382 349 ntBASIC3.34□□□□□ -1.87
CUX1P39880 VN1R80P-201ENST00000597126 338 ntBASIC3.34□□□□□ -1.87
CUX1P39880 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
CUX1P39880 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
CUX1P39880 AC004520.1-201ENST00000608362 1413 ntBASIC3.34□□□□□ -1.88
CUX1P39880 RPL39P40-201ENST00000445481 146 ntBASIC3.34□□□□□ -1.88
CUX1P39880 AC009237.8-201ENST00000445492 379 ntBASIC3.34□□□□□ -1.88
CUX1P39880 AC017007.3-201ENST00000479865 435 ntBASIC3.34□□□□□ -1.88
CUX1P39880 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.88
CUX1P39880 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
CUX1P39880 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC3.34□□□□□ -1.88
CUX1P39880 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC3.34□□□□□ -1.88
CUX1P39880 MIR3683-201ENST00000580847 82 ntBASIC3.34□□□□□ -1.88
CUX1P39880 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC3.34□□□□□ -1.88
CUX1P39880 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.34□□□□□ -1.88
CUX1P39880 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC3.33□□□□□ -1.88
CUX1P39880 ELOCP13-201ENST00000443934 329 ntBASIC3.33□□□□□ -1.88
CUX1P39880 AC087385.1-201ENST00000475062 312 ntBASIC3.33□□□□□ -1.88
CUX1P39880 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC3.33□□□□□ -1.88
CUX1P39880 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC3.33□□□□□ -1.88
CUX1P39880 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.33□□□□□ -1.88
CUX1P39880 MIR4255-201ENST00000579351 72 ntBASIC3.33□□□□□ -1.88
CUX1P39880 AL391813.2-201ENST00000609113 322 ntBASIC3.33□□□□□ -1.88
CUX1P39880 AL110115.1-201ENST00000614396 364 ntBASIC3.33□□□□□ -1.88
CUX1P39880 RNU6-661P-201ENST00000362409 107 ntBASIC3.32□□□□□ -1.88
CUX1P39880 SNORA62.2-201ENST00000364672 152 ntBASIC3.32□□□□□ -1.88
CUX1P39880 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CUX1P39880 RNU6-328P-201ENST00000390887 106 ntBASIC3.32□□□□□ -1.88
CUX1P39880 AC008571.1-201ENST00000467232 300 ntBASIC3.32□□□□□ -1.88
CUX1P39880 IGHVIII-5-1-201ENST00000523059 99 ntBASIC3.32□□□□□ -1.88
CUX1P39880 AC108479.2-201ENST00000617314 601 ntBASIC3.32□□□□□ -1.88
CUX1P39880 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC3.32□□□□□ -1.88
CUX1P39880 AC092447.7-201ENST00000422212 1621 ntBASIC3.31□□□□□ -1.88
CUX1P39880 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
CUX1P39880 U8.10-201ENST00000384260 133 ntBASIC3.31□□□□□ -1.88
CUX1P39880 SNORA40.18-201ENST00000391200 128 ntBASIC3.31□□□□□ -1.88
CUX1P39880 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.31□□□□□ -1.88
CUX1P39880 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC3.31□□□□□ -1.88
CUX1P39880 CBWD4P-201ENST00000445695 655 ntBASIC3.31□□□□□ -1.88
CUX1P39880 AC007182.2-201ENST00000489251 402 ntBASIC3.31□□□□□ -1.88
CUX1P39880 RPL23AP63-201ENST00000498752 471 ntBASIC3.31□□□□□ -1.88
CUX1P39880 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC3.31□□□□□ -1.88
CUX1P39880 TBCAP3-201ENST00000512475 312 ntBASIC3.31□□□□□ -1.88
CUX1P39880 AC008083.2-201ENST00000546707 476 ntBASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms