Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 NCOR1P3-201ENST00000420479 303 ntBASIC4.51□□□□□ -1.69
MSX2P35548 AC092832.1-201ENST00000422934 400 ntBASIC4.51□□□□□ -1.69
MSX2P35548 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC4.51□□□□□ -1.69
MSX2P35548 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC4.51□□□□□ -1.69
MSX2P35548 AC093414.1-201ENST00000434712 514 ntBASIC4.51□□□□□ -1.69
MSX2P35548 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.51□□□□□ -1.69
MSX2P35548 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC4.51□□□□□ -1.69
MSX2P35548 AL513533.1-201ENST00000453728 415 ntBASIC4.51□□□□□ -1.69
MSX2P35548 TRBV26-201ENST00000456572 344 ntBASIC4.51□□□□□ -1.69
MSX2P35548 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.51□□□□□ -1.69
MSX2P35548 snoU13.7-201ENST00000459220 104 ntBASIC4.51□□□□□ -1.69
MSX2P35548 HMGN2P26-201ENST00000463169 339 ntBASIC4.51□□□□□ -1.69
MSX2P35548 RPL32P9-201ENST00000487963 407 ntBASIC4.51□□□□□ -1.69
MSX2P35548 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
MSX2P35548 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC4.51□□□□□ -1.69
MSX2P35548 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC4.51□□□□□ -1.69
MSX2P35548 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC4.51□□□□□ -1.69
MSX2P35548 SCARNA24.1-201ENST00000516465 137 ntBASIC4.51□□□□□ -1.69
MSX2P35548 RN7SKP116-201ENST00000516902 319 ntBASIC4.51□□□□□ -1.69
MSX2P35548 RNU6-1314P-201ENST00000517139 104 ntBASIC4.51□□□□□ -1.69
MSX2P35548 TRMT10BP1-201ENST00000519377 943 ntBASIC4.51□□□□□ -1.69
MSX2P35548 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC4.51□□□□□ -1.69
MSX2P35548 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC4.51□□□□□ -1.69
MSX2P35548 OR4R1P-201ENST00000529879 463 ntBASIC4.51□□□□□ -1.69
MSX2P35548 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC4.51□□□□□ -1.69
MSX2P35548 LSM6P2-201ENST00000552208 177 ntBASIC4.51□□□□□ -1.69
MSX2P35548 AC068831.4-201ENST00000556118 109 ntBASIC4.51□□□□□ -1.69
MSX2P35548 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC4.51□□□□□ -1.69
MSX2P35548 MIR3671-201ENST00000580455 88 ntBASIC4.51□□□□□ -1.69
MSX2P35548 MIR4742-201ENST00000581069 85 ntBASIC4.51□□□□□ -1.69
MSX2P35548 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC4.51□□□□□ -1.69
MSX2P35548 AC067852.4-201ENST00000590314 478 ntBASIC4.51□□□□□ -1.69
MSX2P35548 AC008638.3-201ENST00000603341 463 ntBASIC4.51□□□□□ -1.69
MSX2P35548 SUMO2P15-201ENST00000604285 278 ntBASIC4.51□□□□□ -1.69
MSX2P35548 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC4.51□□□□□ -1.69
MSX2P35548 SNX18P1Y-201ENST00000616231 511 ntBASIC4.51□□□□□ -1.69
MSX2P35548 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC4.51□□□□□ -1.69
MSX2P35548 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.51□□□□□ -1.69
MSX2P35548 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.51□□□□□ -1.69
MSX2P35548 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
MSX2P35548 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.51□□□□□ -1.69
MSX2P35548 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.51□□□□□ -1.69
MSX2P35548 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
MSX2P35548 Z95327.2-201ENST00000414579 1873 ntBASIC4.51□□□□□ -1.69
MSX2P35548 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
MSX2P35548 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
MSX2P35548 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.51□□□□□ -1.69
MSX2P35548 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
MSX2P35548 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
MSX2P35548 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.5□□□□□ -1.69
MSX2P35548 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
MSX2P35548 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
MSX2P35548 RNA5SP132-201ENST00000364725 118 ntBASIC4.5□□□□□ -1.69
MSX2P35548 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.5□□□□□ -1.69
MSX2P35548 SNORA32.2-201ENST00000384049 122 ntBASIC4.5□□□□□ -1.69
MSX2P35548 AL356421.1-201ENST00000403255 413 ntBASIC4.5□□□□□ -1.69
MSX2P35548 AC004987.3-201ENST00000413879 771 ntBASIC4.5□□□□□ -1.69
MSX2P35548 CYCSP10-201ENST00000417973 294 ntBASIC4.5□□□□□ -1.69
MSX2P35548 AL645937.1-202ENST00000421799 937 ntBASIC4.5□□□□□ -1.69
MSX2P35548 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC4.5□□□□□ -1.69
MSX2P35548 RPS17P8-201ENST00000434525 335 ntBASIC4.5□□□□□ -1.69
MSX2P35548 RHOT1P3-201ENST00000436571 331 ntBASIC4.5□□□□□ -1.69
MSX2P35548 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC4.5□□□□□ -1.69
MSX2P35548 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC4.5□□□□□ -1.69
MSX2P35548 KNOP1P3-201ENST00000446933 426 ntBASIC4.5□□□□□ -1.69
MSX2P35548 SLC25A18P1-201ENST00000449385 454 ntBASIC4.5□□□□□ -1.69
MSX2P35548 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC4.5□□□□□ -1.69
MSX2P35548 AL356010.1-201ENST00000456364 102 ntBASIC4.5□□□□□ -1.69
MSX2P35548 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.5□□□□□ -1.69
MSX2P35548 RN7SL97P-201ENST00000486780 299 ntBASIC4.5□□□□□ -1.69
MSX2P35548 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC4.5□□□□□ -1.69
MSX2P35548 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC4.5□□□□□ -1.69
MSX2P35548 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC4.5□□□□□ -1.69
MSX2P35548 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC4.5□□□□□ -1.69
MSX2P35548 AC098848.2-201ENST00000588023 330 ntBASIC4.5□□□□□ -1.69
MSX2P35548 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC4.5□□□□□ -1.69
MSX2P35548 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC4.5□□□□□ -1.69
MSX2P35548 AC010591.1-201ENST00000603941 649 ntBASIC4.5□□□□□ -1.69
MSX2P35548 AC113194.1-201ENST00000606037 500 ntBASIC4.5□□□□□ -1.69
MSX2P35548 AC116312.1-201ENST00000606841 314 ntBASIC4.5□□□□□ -1.69
MSX2P35548 AC010424.2-201ENST00000607594 443 ntBASIC4.5□□□□□ -1.69
MSX2P35548 AC000123.2-201ENST00000623124 461 ntBASIC4.5□□□□□ -1.69
MSX2P35548 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC4.5□□□□□ -1.69
MSX2P35548 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC4.5□□□□□ -1.69
MSX2P35548 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
MSX2P35548 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
MSX2P35548 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
MSX2P35548 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.49□□□□□ -1.69
MSX2P35548 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
MSX2P35548 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
MSX2P35548 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC4.49□□□□□ -1.69
MSX2P35548 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.49□□□□□ -1.69
MSX2P35548 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC4.49□□□□□ -1.69
MSX2P35548 TLK1P1-201ENST00000456760 2440 ntBASIC4.49□□□□□ -1.69
MSX2P35548 RN7SKP162-201ENST00000363605 345 ntBASIC4.49□□□□□ -1.69
MSX2P35548 RNY1P12-201ENST00000364251 105 ntBASIC4.49□□□□□ -1.69
MSX2P35548 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC4.49□□□□□ -1.69
MSX2P35548 IARS-201ENST00000375627 697 ntTSL 3 BASIC4.49□□□□□ -1.69
MSX2P35548 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
MSX2P35548 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 112.5 ms