Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
COL6A3P12111 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
COL6A3P12111 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
COL6A3P12111 TPMTP3-201ENST00000411928 735 ntBASIC2.18□□□□□ -2.06
COL6A3P12111 DYNLL1P5-201ENST00000467158 270 ntBASIC2.18□□□□□ -2.06
COL6A3P12111 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2.18□□□□□ -2.06
COL6A3P12111 MYL12BP1-201ENST00000569826 507 ntBASIC2.18□□□□□ -2.06
COL6A3P12111 AL020991.1-201ENST00000612314 373 ntBASIC2.18□□□□□ -2.06
COL6A3P12111 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC2.18□□□□□ -2.06
COL6A3P12111 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
COL6A3P12111 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
COL6A3P12111 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
COL6A3P12111 AL355379.1-201ENST00000405542 640 ntBASIC2.17□□□□□ -2.06
COL6A3P12111 RPS20P25-201ENST00000412447 352 ntBASIC2.17□□□□□ -2.06
COL6A3P12111 AL645939.1-201ENST00000453429 797 ntBASIC2.17□□□□□ -2.06
COL6A3P12111 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC2.17□□□□□ -2.06
COL6A3P12111 AC011037.1-201ENST00000483964 558 ntBASIC2.17□□□□□ -2.06
COL6A3P12111 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC2.17□□□□□ -2.06
COL6A3P12111 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC2.17□□□□□ -2.06
COL6A3P12111 AL049840.6-202ENST00000603373 279 ntBASIC2.17□□□□□ -2.06
COL6A3P12111 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.17□□□□□ -2.06
COL6A3P12111 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.17□□□□□ -2.06
COL6A3P12111 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
COL6A3P12111 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
COL6A3P12111 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
COL6A3P12111 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC2.17□□□□□ -2.06
COL6A3P12111 RNA5SP210-201ENST00000391034 120 ntBASIC2.17□□□□□ -2.06
COL6A3P12111 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC2.17□□□□□ -2.06
COL6A3P12111 VN1R31P-201ENST00000417498 730 ntBASIC2.17□□□□□ -2.06
COL6A3P12111 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC2.17□□□□□ -2.06
COL6A3P12111 GAPDHP27-201ENST00000447427 1020 ntBASIC2.17□□□□□ -2.06
COL6A3P12111 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.17□□□□□ -2.06
COL6A3P12111 BX322784.1-201ENST00000455793 1077 ntBASIC2.17□□□□□ -2.06
COL6A3P12111 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.17□□□□□ -2.06
COL6A3P12111 AC093278.1-201ENST00000494700 600 ntBASIC2.17□□□□□ -2.06
COL6A3P12111 SRP72-202ENST00000504757 745 ntTSL 2 BASIC2.17□□□□□ -2.06
COL6A3P12111 HMGB1P1-201ENST00000522557 636 ntBASIC2.17□□□□□ -2.06
COL6A3P12111 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC2.17□□□□□ -2.06
COL6A3P12111 MIR5092-201ENST00000583139 88 ntBASIC2.17□□□□□ -2.06
COL6A3P12111 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC2.17□□□□□ -2.06
COL6A3P12111 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
COL6A3P12111 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
COL6A3P12111 Y_RNA.433-201ENST00000384089 102 ntBASIC2.16□□□□□ -2.06
COL6A3P12111 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
COL6A3P12111 KATNBL1P3-201ENST00000443475 909 ntBASIC2.16□□□□□ -2.06
COL6A3P12111 MRPL50P4-201ENST00000446432 475 ntBASIC2.16□□□□□ -2.06
COL6A3P12111 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC2.16□□□□□ -2.06
COL6A3P12111 MIR8081-201ENST00000611533 95 ntBASIC2.16□□□□□ -2.06
COL6A3P12111 AC121761.2-201ENST00000617300 689 ntBASIC2.16□□□□□ -2.06
COL6A3P12111 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
COL6A3P12111 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC2.16□□□□□ -2.06
COL6A3P12111 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
COL6A3P12111 AL358453.1-201ENST00000422522 250 ntBASIC2.16□□□□□ -2.06
COL6A3P12111 RNU7-170P-201ENST00000459303 61 ntBASIC2.16□□□□□ -2.06
COL6A3P12111 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC2.16□□□□□ -2.06
COL6A3P12111 AC016957.1-201ENST00000534895 309 ntBASIC2.16□□□□□ -2.06
COL6A3P12111 AC091515.1-201ENST00000548110 679 ntBASIC2.16□□□□□ -2.06
COL6A3P12111 AC008015.1-201ENST00000555505 465 ntBASIC2.16□□□□□ -2.06
COL6A3P12111 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.16□□□□□ -2.06
COL6A3P12111 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
COL6A3P12111 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC2.16□□□□□ -2.06
COL6A3P12111 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
COL6A3P12111 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC2.16□□□□□ -2.06
COL6A3P12111 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
COL6A3P12111 AL606490.7-201ENST00000433136 191 ntBASIC2.16□□□□□ -2.06
COL6A3P12111 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC2.16□□□□□ -2.06
COL6A3P12111 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.16□□□□□ -2.06
COL6A3P12111 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC2.16□□□□□ -2.06
COL6A3P12111 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
COL6A3P12111 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
COL6A3P12111 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC2.15□□□□□ -2.06
COL6A3P12111 YWHAZP7-201ENST00000436906 631 ntBASIC2.15□□□□□ -2.06
COL6A3P12111 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC2.15□□□□□ -2.06
COL6A3P12111 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC2.15□□□□□ -2.06
COL6A3P12111 AC103975.1-201ENST00000482506 483 ntBASIC2.15□□□□□ -2.06
COL6A3P12111 AC093767.1-201ENST00000504523 156 ntBASIC2.15□□□□□ -2.06
COL6A3P12111 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC2.15□□□□□ -2.06
COL6A3P12111 OR4G1P-201ENST00000588632 938 ntBASIC2.15□□□□□ -2.06
COL6A3P12111 AC073869.7-201ENST00000640874 297 ntBASIC2.15□□□□□ -2.06
COL6A3P12111 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
COL6A3P12111 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC2.15□□□□□ -2.07
COL6A3P12111 MIR181B1-201ENST00000385240 110 ntBASIC2.15□□□□□ -2.07
COL6A3P12111 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC2.15□□□□□ -2.07
COL6A3P12111 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC2.15□□□□□ -2.07
COL6A3P12111 TXNP6-201ENST00000510190 310 ntBASIC2.15□□□□□ -2.07
COL6A3P12111 RN7SKP49-201ENST00000516675 260 ntBASIC2.15□□□□□ -2.07
COL6A3P12111 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.15□□□□□ -2.07
COL6A3P12111 AL353743.4-201ENST00000422653 1547 ntBASIC2.15□□□□□ -2.07
COL6A3P12111 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.15□□□□□ -2.07
COL6A3P12111 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.15□□□□□ -2.07
COL6A3P12111 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
COL6A3P12111 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC2.14□□□□□ -2.07
COL6A3P12111 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC2.14□□□□□ -2.07
COL6A3P12111 AC234775.3-201ENST00000564612 656 ntBASIC2.14□□□□□ -2.07
COL6A3P12111 DDX10P1-201ENST00000448545 1933 ntBASIC2.14□□□□□ -2.07
COL6A3P12111 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
COL6A3P12111 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC2.14□□□□□ -2.07
COL6A3P12111 AL390023.1-201ENST00000428836 262 ntBASIC2.14□□□□□ -2.07
COL6A3P12111 COX6CP2-201ENST00000444980 225 ntBASIC2.14□□□□□ -2.07
COL6A3P12111 DYNLL1P6-201ENST00000503440 264 ntBASIC2.14□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms