Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
COL6A1P12109 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL6A1P12109 ANKRD62P1-201ENST00000434304 1623 ntBASIC5.05□□□□□ -1.6
COL6A1P12109 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
COL6A1P12109 AC006026.1-201ENST00000444025 1803 ntBASIC5.05□□□□□ -1.6
COL6A1P12109 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC5.05□□□□□ -1.6
COL6A1P12109 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.05□□□□□ -1.6
COL6A1P12109 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL6A1P12109 RNA5SP387-201ENST00000364226 106 ntBASIC5.05□□□□□ -1.6
COL6A1P12109 RNU6-777P-201ENST00000364265 104 ntBASIC5.05□□□□□ -1.6
COL6A1P12109 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL6A1P12109 RNU6-657P-201ENST00000383904 107 ntBASIC5.05□□□□□ -1.6
COL6A1P12109 RNU6-878P-201ENST00000384578 110 ntBASIC5.05□□□□□ -1.6
COL6A1P12109 RNU2-8P-201ENST00000410727 190 ntBASIC5.05□□□□□ -1.6
COL6A1P12109 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC5.05□□□□□ -1.6
COL6A1P12109 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC5.05□□□□□ -1.6
COL6A1P12109 SNRPEP10-201ENST00000420249 274 ntBASIC5.05□□□□□ -1.6
COL6A1P12109 RPS12P5-201ENST00000423449 371 ntBASIC5.05□□□□□ -1.6
COL6A1P12109 COX6CP15-201ENST00000426313 211 ntBASIC5.05□□□□□ -1.6
COL6A1P12109 AL035410.1-201ENST00000427409 427 ntBASIC5.05□□□□□ -1.6
COL6A1P12109 AL117339.2-201ENST00000430475 180 ntBASIC5.05□□□□□ -1.6
COL6A1P12109 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC5.05□□□□□ -1.6
COL6A1P12109 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.05□□□□□ -1.6
COL6A1P12109 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL6A1P12109 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC5.05□□□□□ -1.6
COL6A1P12109 RPL23AP20-201ENST00000447965 421 ntBASIC5.05□□□□□ -1.6
COL6A1P12109 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC5.05□□□□□ -1.6
COL6A1P12109 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC5.05□□□□□ -1.6
COL6A1P12109 BTF3P5-201ENST00000457252 467 ntBASIC5.05□□□□□ -1.6
COL6A1P12109 RPS15AP1-201ENST00000457423 391 ntBASIC5.05□□□□□ -1.6
COL6A1P12109 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC5.05□□□□□ -1.6
COL6A1P12109 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC5.05□□□□□ -1.6
COL6A1P12109 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL6A1P12109 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC5.05□□□□□ -1.6
COL6A1P12109 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC5.05□□□□□ -1.6
COL6A1P12109 Y_RNA.672-201ENST00000516289 104 ntBASIC5.05□□□□□ -1.6
COL6A1P12109 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC5.05□□□□□ -1.6
COL6A1P12109 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC5.05□□□□□ -1.6
COL6A1P12109 HSPA8P13-201ENST00000523715 472 ntBASIC5.05□□□□□ -1.6
COL6A1P12109 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC5.05□□□□□ -1.6
COL6A1P12109 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC5.05□□□□□ -1.6
COL6A1P12109 FKBP1BP1-201ENST00000553366 325 ntBASIC5.05□□□□□ -1.6
COL6A1P12109 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC5.05□□□□□ -1.6
COL6A1P12109 AC034268.2-201ENST00000571784 482 ntBASIC5.05□□□□□ -1.6
COL6A1P12109 MTCO3P13-201ENST00000577757 781 ntBASIC5.05□□□□□ -1.6
COL6A1P12109 MIR4637-201ENST00000582405 84 ntBASIC5.05□□□□□ -1.6
COL6A1P12109 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC5.05□□□□□ -1.6
COL6A1P12109 HMGN1P30-201ENST00000589286 268 ntBASIC5.05□□□□□ -1.6
COL6A1P12109 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC5.05□□□□□ -1.6
COL6A1P12109 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC5.05□□□□□ -1.6
COL6A1P12109 BCRP9-201ENST00000605312 388 ntBASIC5.05□□□□□ -1.6
COL6A1P12109 RNA5SP108-201ENST00000605921 117 ntBASIC5.05□□□□□ -1.6
COL6A1P12109 AL161734.1-201ENST00000609720 557 ntBASIC5.05□□□□□ -1.6
COL6A1P12109 PART1_1.1-201ENST00000611761 217 ntBASIC5.05□□□□□ -1.6
COL6A1P12109 AC009233.1-201ENST00000616477 371 ntBASIC5.05□□□□□ -1.6
COL6A1P12109 MIR8059-201ENST00000620427 81 ntBASIC5.05□□□□□ -1.6
COL6A1P12109 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC5.05□□□□□ -1.6
COL6A1P12109 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC5.05□□□□□ -1.6
COL6A1P12109 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL6A1P12109 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL6A1P12109 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL6A1P12109 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL6A1P12109 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL6A1P12109 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC5.04□□□□□ -1.6
COL6A1P12109 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL6A1P12109 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL6A1P12109 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL6A1P12109 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL6A1P12109 LDHAL6CP-202ENST00000550738 3224 ntBASIC5.04□□□□□ -1.6
COL6A1P12109 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL6A1P12109 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL6A1P12109 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC5.04□□□□□ -1.6
COL6A1P12109 SSXP10-201ENST00000402595 565 ntBASIC5.04□□□□□ -1.6
COL6A1P12109 HMGB1P17-201ENST00000403495 628 ntBASIC5.04□□□□□ -1.6
COL6A1P12109 AP000580.1-201ENST00000404439 358 ntBASIC5.04□□□□□ -1.6
COL6A1P12109 RN7SKP177-201ENST00000410567 355 ntBASIC5.04□□□□□ -1.6
COL6A1P12109 RN7SKP159-201ENST00000410657 292 ntBASIC5.04□□□□□ -1.6
COL6A1P12109 CYCSP19-201ENST00000411715 316 ntBASIC5.04□□□□□ -1.6
COL6A1P12109 EEF1A1P40-201ENST00000412883 573 ntBASIC5.04□□□□□ -1.6
COL6A1P12109 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC5.04□□□□□ -1.6
COL6A1P12109 AL356095.1-201ENST00000417217 199 ntBASIC5.04□□□□□ -1.6
COL6A1P12109 RPL23AP38-201ENST00000423801 469 ntBASIC5.04□□□□□ -1.6
COL6A1P12109 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC5.04□□□□□ -1.6
COL6A1P12109 RPL36P19-201ENST00000430744 301 ntBASIC5.04□□□□□ -1.6
COL6A1P12109 AC010881.1-201ENST00000433830 235 ntBASIC5.04□□□□□ -1.6
COL6A1P12109 HMGB3P12-201ENST00000438745 556 ntBASIC5.04□□□□□ -1.6
COL6A1P12109 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC5.04□□□□□ -1.6
COL6A1P12109 RPL17P49-201ENST00000443728 411 ntBASIC5.04□□□□□ -1.6
COL6A1P12109 ARPC3P5-201ENST00000448802 534 ntBASIC5.04□□□□□ -1.6
COL6A1P12109 MTND1P12-201ENST00000455231 147 ntBASIC5.04□□□□□ -1.6
COL6A1P12109 DHFRP3-201ENST00000455595 559 ntBASIC5.04□□□□□ -1.6
COL6A1P12109 AC022364.2-201ENST00000457963 554 ntBASIC5.04□□□□□ -1.6
COL6A1P12109 AC245028.2-201ENST00000458673 253 ntBASIC5.04□□□□□ -1.6
COL6A1P12109 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL6A1P12109 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC5.04□□□□□ -1.6
COL6A1P12109 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC5.04□□□□□ -1.6
COL6A1P12109 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC5.04□□□□□ -1.6
COL6A1P12109 SCARNA15.1-201ENST00000516384 125 ntBASIC5.04□□□□□ -1.6
COL6A1P12109 RNU6-1003P-201ENST00000517099 105 ntBASIC5.04□□□□□ -1.6
COL6A1P12109 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms