Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 RPL23AP55-201ENST00000498163 452 ntBASIC3.26□□□□□ -1.89
MSH4O15457 DYNLL1P6-201ENST00000503440 264 ntBASIC3.26□□□□□ -1.89
MSH4O15457 HIGD1AP13-201ENST00000509878 289 ntBASIC3.26□□□□□ -1.89
MSH4O15457 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
MSH4O15457 AC008837.1-201ENST00000511513 412 ntBASIC3.26□□□□□ -1.89
MSH4O15457 SCARNA13-201ENST00000516672 275 ntBASIC3.26□□□□□ -1.89
MSH4O15457 AC093331.1-201ENST00000521474 169 ntBASIC3.26□□□□□ -1.89
MSH4O15457 ZNF705CP-201ENST00000530515 889 ntBASIC3.26□□□□□ -1.89
MSH4O15457 MTND5P21-201ENST00000531961 522 ntBASIC3.26□□□□□ -1.89
MSH4O15457 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
MSH4O15457 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.26□□□□□ -1.89
MSH4O15457 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.26□□□□□ -1.89
MSH4O15457 CYCSP39-201ENST00000565821 309 ntBASIC3.26□□□□□ -1.89
MSH4O15457 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.26□□□□□ -1.89
MSH4O15457 AC122134.1-202ENST00000569111 1201 ntBASIC3.26□□□□□ -1.89
MSH4O15457 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.26□□□□□ -1.89
MSH4O15457 AL583856.2-201ENST00000606298 543 ntBASIC3.26□□□□□ -1.89
MSH4O15457 AC126544.2-201ENST00000625174 749 ntBASIC3.26□□□□□ -1.89
MSH4O15457 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC3.26□□□□□ -1.89
MSH4O15457 DBF4P1-201ENST00000412976 1892 ntBASIC3.26□□□□□ -1.89
MSH4O15457 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
MSH4O15457 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.26□□□□□ -1.89
MSH4O15457 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC3.25□□□□□ -1.89
MSH4O15457 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.25□□□□□ -1.89
MSH4O15457 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
MSH4O15457 HMGB1P5-201ENST00000255320 642 ntBASIC3.25□□□□□ -1.89
MSH4O15457 RNU6-236P-201ENST00000363886 106 ntBASIC3.25□□□□□ -1.89
MSH4O15457 SNORA80A-201ENST00000363922 136 ntBASIC3.25□□□□□ -1.89
MSH4O15457 MIR217-201ENST00000384817 110 ntBASIC3.25□□□□□ -1.89
MSH4O15457 AC096533.1-201ENST00000411645 353 ntBASIC3.25□□□□□ -1.89
MSH4O15457 AC093156.1-201ENST00000440382 670 ntBASIC3.25□□□□□ -1.89
MSH4O15457 COX6CP18-201ENST00000448769 222 ntBASIC3.25□□□□□ -1.89
MSH4O15457 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.25□□□□□ -1.89
MSH4O15457 RPS27P29-201ENST00000463110 252 ntBASIC3.25□□□□□ -1.89
MSH4O15457 AC010301.1-201ENST00000473936 355 ntBASIC3.25□□□□□ -1.89
MSH4O15457 AC078785.3-201ENST00000476607 425 ntBASIC3.25□□□□□ -1.89
MSH4O15457 AC084024.2-201ENST00000503480 791 ntBASIC3.25□□□□□ -1.89
MSH4O15457 AC097462.2-201ENST00000504623 481 ntBASIC3.25□□□□□ -1.89
MSH4O15457 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.25□□□□□ -1.89
MSH4O15457 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC3.25□□□□□ -1.89
MSH4O15457 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
MSH4O15457 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC3.25□□□□□ -1.89
MSH4O15457 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.25□□□□□ -1.89
MSH4O15457 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC3.25□□□□□ -1.89
MSH4O15457 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC3.25□□□□□ -1.89
MSH4O15457 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC3.25□□□□□ -1.89
MSH4O15457 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC3.25□□□□□ -1.89
MSH4O15457 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.25□□□□□ -1.89
MSH4O15457 AC107016.2-201ENST00000547968 190 ntBASIC3.25□□□□□ -1.89
MSH4O15457 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.25□□□□□ -1.89
MSH4O15457 AC034105.3-201ENST00000565294 442 ntBASIC3.25□□□□□ -1.89
MSH4O15457 LARP7P3-201ENST00000579888 337 ntBASIC3.25□□□□□ -1.89
MSH4O15457 AC022509.4-201ENST00000621404 572 ntBASIC3.25□□□□□ -1.89
MSH4O15457 AL138955.1-201ENST00000622881 1040 ntBASIC3.25□□□□□ -1.89
MSH4O15457 AP002371.2-201ENST00000624450 503 ntBASIC3.25□□□□□ -1.89
MSH4O15457 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
MSH4O15457 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC3.25□□□□□ -1.89
MSH4O15457 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
MSH4O15457 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
MSH4O15457 ZNF826P-207ENST00000622273 1910 ntBASIC3.25□□□□□ -1.89
MSH4O15457 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
MSH4O15457 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.24□□□□□ -1.89
MSH4O15457 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.24□□□□□ -1.89
MSH4O15457 AC010733.2-201ENST00000589496 5702 ntBASIC3.24□□□□□ -1.89
MSH4O15457 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
MSH4O15457 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
MSH4O15457 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.24□□□□□ -1.89
MSH4O15457 RNU6-989P-201ENST00000362756 107 ntBASIC3.24□□□□□ -1.89
MSH4O15457 RNU6-251P-201ENST00000363235 104 ntBASIC3.24□□□□□ -1.89
MSH4O15457 RNU6-629P-201ENST00000384061 103 ntBASIC3.24□□□□□ -1.89
MSH4O15457 MIR634-201ENST00000385208 97 ntBASIC3.24□□□□□ -1.89
MSH4O15457 AL122016.1-201ENST00000403365 367 ntBASIC3.24□□□□□ -1.89
MSH4O15457 AL133384.1-201ENST00000412744 351 ntBASIC3.24□□□□□ -1.89
MSH4O15457 BOLA3P4-201ENST00000418151 400 ntBASIC3.24□□□□□ -1.89
MSH4O15457 FNDC3CP-201ENST00000420795 1155 ntBASIC3.24□□□□□ -1.89
MSH4O15457 COTL1P1-201ENST00000422309 375 ntBASIC3.24□□□□□ -1.89
MSH4O15457 PTP4A1P7-201ENST00000423476 514 ntBASIC3.24□□□□□ -1.89
MSH4O15457 Z93242.1-201ENST00000427102 353 ntBASIC3.24□□□□□ -1.89
MSH4O15457 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.24□□□□□ -1.89
MSH4O15457 AC112653.1-201ENST00000443851 386 ntBASIC3.24□□□□□ -1.89
MSH4O15457 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC3.24□□□□□ -1.89
MSH4O15457 NPM1P13-201ENST00000452663 865 ntBASIC3.24□□□□□ -1.89
MSH4O15457 AP001486.1-201ENST00000463339 476 ntBASIC3.24□□□□□ -1.89
MSH4O15457 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC3.24□□□□□ -1.89
MSH4O15457 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC3.24□□□□□ -1.89
MSH4O15457 AC008427.1-201ENST00000503102 655 ntBASIC3.24□□□□□ -1.89
MSH4O15457 RN7SKP244-201ENST00000516513 307 ntBASIC3.24□□□□□ -1.89
MSH4O15457 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC3.24□□□□□ -1.89
MSH4O15457 MTND2P7-201ENST00000521337 640 ntBASIC3.24□□□□□ -1.89
MSH4O15457 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC3.24□□□□□ -1.89
MSH4O15457 AP001317.1-201ENST00000531194 960 ntBASIC3.24□□□□□ -1.89
MSH4O15457 AC087897.1-201ENST00000550134 156 ntBASIC3.24□□□□□ -1.89
MSH4O15457 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.24□□□□□ -1.89
MSH4O15457 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC3.24□□□□□ -1.89
MSH4O15457 AC006116.7-201ENST00000590141 756 ntBASIC3.24□□□□□ -1.89
MSH4O15457 DPRXP5-201ENST00000604662 539 ntBASIC3.24□□□□□ -1.89
MSH4O15457 AL137843.1-201ENST00000605078 385 ntBASIC3.24□□□□□ -1.89
MSH4O15457 AC073968.1-201ENST00000618594 637 ntBASIC3.24□□□□□ -1.89
MSH4O15457 AL590240.3-201ENST00000621416 943 ntBASIC3.24□□□□□ -1.89
MSH4O15457 PLCE1P1-201ENST00000622094 305 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 154 ms