Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC5.76□□□□□ -1.49
USP3Q9Y6I4 snoU109.4-201ENST00000458953 143 ntBASIC5.76□□□□□ -1.49
USP3Q9Y6I4 AC053481.1-201ENST00000467217 306 ntBASIC5.76□□□□□ -1.49
USP3Q9Y6I4 RN7SL188P-201ENST00000469842 285 ntBASIC5.76□□□□□ -1.49
USP3Q9Y6I4 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC5.76□□□□□ -1.49
USP3Q9Y6I4 AC090686.1-201ENST00000481577 749 ntBASIC5.76□□□□□ -1.49
USP3Q9Y6I4 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC5.76□□□□□ -1.49
USP3Q9Y6I4 SLC25A15P5-201ENST00000508033 253 ntBASIC5.76□□□□□ -1.49
USP3Q9Y6I4 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.76□□□□□ -1.49
USP3Q9Y6I4 BX510359.5-201ENST00000515651 304 ntBASIC5.76□□□□□ -1.49
USP3Q9Y6I4 IGHVIII-47-1-201ENST00000518187 331 ntBASIC5.76□□□□□ -1.49
USP3Q9Y6I4 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC5.76□□□□□ -1.49
USP3Q9Y6I4 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC5.76□□□□□ -1.49
USP3Q9Y6I4 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC5.76□□□□□ -1.49
USP3Q9Y6I4 MIR4489-201ENST00000578869 62 ntBASIC5.76□□□□□ -1.49
USP3Q9Y6I4 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.76□□□□□ -1.49
USP3Q9Y6I4 HMGN2P28-201ENST00000606102 262 ntBASIC5.76□□□□□ -1.49
USP3Q9Y6I4 AL512624.1-201ENST00000613638 469 ntBASIC5.76□□□□□ -1.49
USP3Q9Y6I4 AL359547.2-201ENST00000615810 418 ntBASIC5.76□□□□□ -1.49
USP3Q9Y6I4 AC091925.2-201ENST00000625059 256 ntBASIC5.76□□□□□ -1.49
USP3Q9Y6I4 CYP4F35P-202ENST00000636121 390 ntBASIC5.76□□□□□ -1.49
USP3Q9Y6I4 AP000550.3-201ENST00000637734 379 ntBASIC5.76□□□□□ -1.49
USP3Q9Y6I4 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC5.76□□□□□ -1.49
USP3Q9Y6I4 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
USP3Q9Y6I4 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
USP3Q9Y6I4 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
USP3Q9Y6I4 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.76□□□□□ -1.49
USP3Q9Y6I4 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC5.75□□□□□ -1.49
USP3Q9Y6I4 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
USP3Q9Y6I4 AC104964.3-201ENST00000606115 2860 ntBASIC5.75□□□□□ -1.49
USP3Q9Y6I4 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
USP3Q9Y6I4 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC5.75□□□□□ -1.49
USP3Q9Y6I4 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC5.75□□□□□ -1.49
USP3Q9Y6I4 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
USP3Q9Y6I4 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.75□□□□□ -1.49
USP3Q9Y6I4 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
USP3Q9Y6I4 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
USP3Q9Y6I4 Y_RNA.2-201ENST00000362330 96 ntBASIC5.75□□□□□ -1.49
USP3Q9Y6I4 RNA5SP453-201ENST00000362503 119 ntBASIC5.75□□□□□ -1.49
USP3Q9Y6I4 RNA5SP335-201ENST00000363817 110 ntBASIC5.75□□□□□ -1.49
USP3Q9Y6I4 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
USP3Q9Y6I4 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
USP3Q9Y6I4 Y_RNA.396-201ENST00000383949 103 ntBASIC5.75□□□□□ -1.49
USP3Q9Y6I4 SNORA16A-201ENST00000384342 137 ntBASIC5.75□□□□□ -1.49
USP3Q9Y6I4 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC5.75□□□□□ -1.49
USP3Q9Y6I4 RPS12P5-201ENST00000423449 371 ntBASIC5.75□□□□□ -1.49
USP3Q9Y6I4 RPL12P34-201ENST00000424532 479 ntBASIC5.75□□□□□ -1.49
USP3Q9Y6I4 ARL5AP4-201ENST00000430731 512 ntBASIC5.75□□□□□ -1.49
USP3Q9Y6I4 CFL1P1-202ENST00000432948 411 ntBASIC5.75□□□□□ -1.49
USP3Q9Y6I4 AC138761.5-201ENST00000433967 325 ntBASIC5.75□□□□□ -1.49
USP3Q9Y6I4 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC5.75□□□□□ -1.49
USP3Q9Y6I4 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.75□□□□□ -1.49
USP3Q9Y6I4 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC5.75□□□□□ -1.49
USP3Q9Y6I4 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC5.75□□□□□ -1.49
USP3Q9Y6I4 RNU6-27P-201ENST00000516146 107 ntBASIC5.75□□□□□ -1.49
USP3Q9Y6I4 AC090151.1-201ENST00000520784 730 ntBASIC5.75□□□□□ -1.49
USP3Q9Y6I4 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
USP3Q9Y6I4 AC023157.2-201ENST00000540596 141 ntBASIC5.75□□□□□ -1.49
USP3Q9Y6I4 HSBP1P1-201ENST00000555205 166 ntBASIC5.75□□□□□ -1.49
USP3Q9Y6I4 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC5.75□□□□□ -1.49
USP3Q9Y6I4 IMMP1LP3-201ENST00000604197 224 ntBASIC5.75□□□□□ -1.49
USP3Q9Y6I4 AC013244.1-201ENST00000604279 193 ntBASIC5.75□□□□□ -1.49
USP3Q9Y6I4 AC007998.5-201ENST00000622938 237 ntBASIC5.75□□□□□ -1.49
USP3Q9Y6I4 LDHA-225ENST00000625635 141 ntTSL 5 BASIC5.75□□□□□ -1.49
USP3Q9Y6I4 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
USP3Q9Y6I4 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.75□□□□□ -1.49
USP3Q9Y6I4 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
USP3Q9Y6I4 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.75□□□□□ -1.49
USP3Q9Y6I4 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
USP3Q9Y6I4 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.75□□□□□ -1.49
USP3Q9Y6I4 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
USP3Q9Y6I4 AC074029.4-201ENST00000624796 1859 ntBASIC5.75□□□□□ -1.49
USP3Q9Y6I4 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.74□□□□□ -1.49
USP3Q9Y6I4 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.74□□□□□ -1.49
USP3Q9Y6I4 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC5.74□□□□□ -1.49
USP3Q9Y6I4 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC5.74□□□□□ -1.49
USP3Q9Y6I4 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
USP3Q9Y6I4 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.74□□□□□ -1.49
USP3Q9Y6I4 AC020656.2-201ENST00000613291 5309 ntBASIC5.74□□□□□ -1.49
USP3Q9Y6I4 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
USP3Q9Y6I4 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
USP3Q9Y6I4 RNU6-450P-201ENST00000364654 107 ntBASIC5.74□□□□□ -1.49
USP3Q9Y6I4 Y_RNA.515-201ENST00000384535 112 ntBASIC5.74□□□□□ -1.49
USP3Q9Y6I4 RNU11-201ENST00000387069 134 ntBASIC5.74□□□□□ -1.49
USP3Q9Y6I4 AC243428.1-201ENST00000421099 264 ntBASIC5.74□□□□□ -1.49
USP3Q9Y6I4 SRSF1P1-201ENST00000424058 520 ntBASIC5.74□□□□□ -1.49
USP3Q9Y6I4 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC5.74□□□□□ -1.49
USP3Q9Y6I4 AC011816.1-201ENST00000441346 546 ntBASIC5.74□□□□□ -1.49
USP3Q9Y6I4 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC5.74□□□□□ -1.49
USP3Q9Y6I4 AC010655.1-201ENST00000449336 292 ntBASIC5.74□□□□□ -1.49
USP3Q9Y6I4 AC018638.3-201ENST00000461273 132 ntBASIC5.74□□□□□ -1.49
USP3Q9Y6I4 AC117503.1-201ENST00000472241 394 ntBASIC5.74□□□□□ -1.49
USP3Q9Y6I4 RPL31P60-201ENST00000478450 367 ntBASIC5.74□□□□□ -1.49
USP3Q9Y6I4 AC068781.1-201ENST00000488231 618 ntBASIC5.74□□□□□ -1.49
USP3Q9Y6I4 CEACAMP10-202ENST00000495431 496 ntBASIC5.74□□□□□ -1.49
USP3Q9Y6I4 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC5.74□□□□□ -1.49
USP3Q9Y6I4 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC5.74□□□□□ -1.49
USP3Q9Y6I4 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.74□□□□□ -1.49
USP3Q9Y6I4 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC5.74□□□□□ -1.49
USP3Q9Y6I4 AC090022.1-201ENST00000546569 311 ntBASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms