Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 USP9YP18-201ENST00000425912 695 ntBASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 ISCA1P6-201ENST00000427740 390 ntBASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 LAMTOR3P1-201ENST00000428620 370 ntBASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 CBX1P1-201ENST00000440184 427 ntBASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 AL162388.1-201ENST00000450912 352 ntBASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 FGF7P6-202ENST00000451282 293 ntBASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 AL359385.1-201ENST00000456509 365 ntBASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 HMGB1P25-201ENST00000468402 607 ntBASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 RPL21P126-201ENST00000470049 478 ntBASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 RBM43P1-201ENST00000476891 1081 ntBASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 AC055855.1-201ENST00000489563 579 ntBASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 AC025554.1-201ENST00000505641 188 ntBASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 HMGB1P29-201ENST00000505659 499 ntBASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 AC017037.1-201ENST00000508460 471 ntBASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 AL356432.3-201ENST00000568952 465 ntBASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 MIR3118-1-201ENST00000581787 76 ntBASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 AL354984.3-201ENST00000604803 325 ntBASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 AL451044.1-201ENST00000604867 238 ntBASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 AC012409.3-201ENST00000611343 981 ntBASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 AC090517.2-201ENST00000614966 680 ntBASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 AL158209.2-201ENST00000619266 216 ntBASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 AC002550.2-201ENST00000621246 394 ntBASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 CR381653.2-201ENST00000624041 768 ntBASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 OR56B2P-202ENST00000641377 2453 ntBASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.49□□□□□ -1.69
PCDHA3Q9Y5H8 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 AC074029.4-201ENST00000624796 1859 ntBASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 OR5P1P-201ENST00000299512 925 ntBASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 MIR331-201ENST00000362302 94 ntBASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 RNU6-1103P-201ENST00000384150 107 ntBASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 Y_RNA.493-201ENST00000384422 102 ntBASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 RPA3-203ENST00000401447 414 ntTSL 3 BASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 AL049693.1-201ENST00000402760 611 ntBASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 RNA5SP104-201ENST00000410989 118 ntBASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 RNU6-195P-201ENST00000411352 109 ntBASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 MTND3P17-201ENST00000416968 344 ntBASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 TIMM9P3-201ENST00000428659 274 ntBASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 RPL23AP89-201ENST00000439324 255 ntBASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 AC003071.1-201ENST00000451219 789 ntBASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 AL513533.1-201ENST00000453728 415 ntBASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 RNU6-314P-201ENST00000516574 104 ntBASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 CCNG2P1-201ENST00000549521 1000 ntBASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 AC060771.1-201ENST00000582031 164 ntBASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 AL590099.1-201ENST00000615276 138 ntBASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 AC099669.2-201ENST00000616549 437 ntBASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 uc_338.13-201ENST00000618243 179 ntBASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 NMD3P1-201ENST00000439704 1488 ntBASIC4.48□□□□□ -1.69
PCDHA3Q9Y5H8 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.47□□□□□ -1.69
PCDHA3Q9Y5H8 AC090229.1-201ENST00000590983 1609 ntBASIC4.47□□□□□ -1.69
PCDHA3Q9Y5H8 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.47□□□□□ -1.69
PCDHA3Q9Y5H8 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.47□□□□□ -1.69
PCDHA3Q9Y5H8 RNA5SP443-201ENST00000363083 132 ntBASIC4.47□□□□□ -1.69
PCDHA3Q9Y5H8 RNU6-356P-201ENST00000384140 107 ntBASIC4.47□□□□□ -1.69
PCDHA3Q9Y5H8 Y_RNA.548-201ENST00000384656 105 ntBASIC4.47□□□□□ -1.69
PCDHA3Q9Y5H8 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
PCDHA3Q9Y5H8 LAP3P1-201ENST00000403648 294 ntBASIC4.47□□□□□ -1.69
PCDHA3Q9Y5H8 CCNG1P1-201ENST00000406783 885 ntBASIC4.47□□□□□ -1.69
PCDHA3Q9Y5H8 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC4.47□□□□□ -1.69
PCDHA3Q9Y5H8 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC4.47□□□□□ -1.69
PCDHA3Q9Y5H8 AC079448.1-201ENST00000449377 373 ntBASIC4.47□□□□□ -1.69
PCDHA3Q9Y5H8 RN7SL354P-201ENST00000469282 294 ntBASIC4.47□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms