Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 RPS4XP20-201ENST00000505751 772 ntBASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 SNORA40.15-201ENST00000516884 107 ntBASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 AC087369.1-201ENST00000520775 996 ntBASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 IGHV1-14-201ENST00000523391 241 ntBASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 VN1R91P-201ENST00000594377 169 ntBASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 AL160281.1-201ENST00000605307 311 ntBASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 AC098479.1-201ENST00000609225 154 ntBASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 AC005344.1-201ENST00000613391 459 ntBASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
LIMD1Q9UGP4 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
LIMD1Q9UGP4 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC6.21□□□□□ -1.41
LIMD1Q9UGP4 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC6.21□□□□□ -1.41
LIMD1Q9UGP4 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC6.21□□□□□ -1.41
LIMD1Q9UGP4 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
LIMD1Q9UGP4 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.41
LIMD1Q9UGP4 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
LIMD1Q9UGP4 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 AC105235.1-201ENST00000623208 1816 ntBASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 RNU6-288P-201ENST00000363690 104 ntBASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 RNU4-50P-201ENST00000364361 141 ntBASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 RNA5SP500-201ENST00000364486 119 ntBASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 RNU6-790P-201ENST00000384479 105 ntBASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 MIR625-201ENST00000385047 85 ntBASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 AC016739.1-201ENST00000405359 345 ntBASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 RNU2-43P-201ENST00000410306 190 ntBASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 Y_RNA.625-201ENST00000411256 107 ntBASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 AC116036.1-201ENST00000412199 367 ntBASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 RPL21P90-201ENST00000415692 466 ntBASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 AC092967.1-201ENST00000449016 481 ntBASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 SNORA25.11-201ENST00000515935 105 ntBASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 AC144568.1-201ENST00000520139 137 ntBASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 AC104576.1-201ENST00000524225 88 ntBASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 SARNP-203ENST00000552080 726 ntTSL 2 BASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 MIR3128-201ENST00000581957 66 ntBASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 MIR4273-201ENST00000582824 84 ntBASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 AC027229.1-201ENST00000583887 253 ntBASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 OR1M4P-201ENST00000589199 287 ntBASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 AC024255.1-201ENST00000614376 102 ntBASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 RN7SL544P-201ENST00000617232 284 ntBASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 RN7SL763P-201ENST00000620922 284 ntBASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 AL137067.2-201ENST00000621202 131 ntBASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 AL031601.2-202ENST00000622650 282 ntBASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 ZNF658B-201ENST00000602828 3408 ntBASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
LIMD1Q9UGP4 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 MAPK10-287ENST00000641217 3037 ntBASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 RN7SKP216-201ENST00000411050 312 ntBASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 BX842559.1-201ENST00000419615 532 ntBASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 AC007562.1-201ENST00000421819 517 ntBASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 CYCSP51-201ENST00000443545 318 ntBASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 AC231760.1-201ENST00000498002 260 ntBASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 RNU6-840P-201ENST00000517275 65 ntBASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC6.2□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms