Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.31□□□□□ -1.88
LHX3Q9UBR4 AL132657.2-201ENST00000564417 358 ntBASIC3.31□□□□□ -1.88
LHX3Q9UBR4 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.31□□□□□ -1.88
LHX3Q9UBR4 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
LHX3Q9UBR4 ZNF192P1-203ENST00000565888 810 ntBASIC3.31□□□□□ -1.88
LHX3Q9UBR4 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.31□□□□□ -1.88
LHX3Q9UBR4 AL606834.2-201ENST00000602954 668 ntBASIC3.31□□□□□ -1.88
LHX3Q9UBR4 AC011816.2-201ENST00000607089 556 ntBASIC3.31□□□□□ -1.88
LHX3Q9UBR4 AL157392.4-201ENST00000609756 345 ntBASIC3.31□□□□□ -1.88
LHX3Q9UBR4 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
LHX3Q9UBR4 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
LHX3Q9UBR4 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.31□□□□□ -1.88
LHX3Q9UBR4 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
LHX3Q9UBR4 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
LHX3Q9UBR4 AL049780.3-201ENST00000624612 1583 ntBASIC3.3□□□□□ -1.88
LHX3Q9UBR4 AC066616.2-201ENST00000559334 1481 ntBASIC3.3□□□□□ -1.88
LHX3Q9UBR4 RNA5SP387-201ENST00000364226 106 ntBASIC3.3□□□□□ -1.88
LHX3Q9UBR4 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
LHX3Q9UBR4 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.3□□□□□ -1.88
LHX3Q9UBR4 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.3□□□□□ -1.88
LHX3Q9UBR4 PSMA6P3-201ENST00000428242 164 ntBASIC3.3□□□□□ -1.88
LHX3Q9UBR4 HMGB1P12-201ENST00000438594 598 ntBASIC3.3□□□□□ -1.88
LHX3Q9UBR4 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC3.3□□□□□ -1.88
LHX3Q9UBR4 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.3□□□□□ -1.88
LHX3Q9UBR4 MTCO2P25-201ENST00000447065 681 ntBASIC3.3□□□□□ -1.88
LHX3Q9UBR4 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC3.3□□□□□ -1.88
LHX3Q9UBR4 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
LHX3Q9UBR4 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
LHX3Q9UBR4 RPL21P104-201ENST00000464143 478 ntBASIC3.3□□□□□ -1.88
LHX3Q9UBR4 RPS15AP17-201ENST00000470598 390 ntBASIC3.3□□□□□ -1.88
LHX3Q9UBR4 RPS4XP13-201ENST00000483219 789 ntBASIC3.3□□□□□ -1.88
LHX3Q9UBR4 RPL32P34-201ENST00000486380 400 ntBASIC3.3□□□□□ -1.88
LHX3Q9UBR4 AL024509.2-201ENST00000493462 493 ntBASIC3.3□□□□□ -1.88
LHX3Q9UBR4 AC110794.1-201ENST00000505816 425 ntBASIC3.3□□□□□ -1.88
LHX3Q9UBR4 AC114322.1-201ENST00000506771 926 ntBASIC3.3□□□□□ -1.88
LHX3Q9UBR4 HMGB1P28-201ENST00000507778 552 ntBASIC3.3□□□□□ -1.88
LHX3Q9UBR4 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.3□□□□□ -1.88
LHX3Q9UBR4 AC004062.1-201ENST00000509926 645 ntBASIC3.3□□□□□ -1.88
LHX3Q9UBR4 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.3□□□□□ -1.88
LHX3Q9UBR4 CA1-215ENST00000522389 551 ntTSL 3 BASIC3.3□□□□□ -1.88
LHX3Q9UBR4 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC3.3□□□□□ -1.88
LHX3Q9UBR4 SLC2A13P1-201ENST00000531560 322 ntBASIC3.3□□□□□ -1.88
LHX3Q9UBR4 AC126177.3-201ENST00000551839 688 ntBASIC3.3□□□□□ -1.88
LHX3Q9UBR4 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.3□□□□□ -1.88
LHX3Q9UBR4 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.3□□□□□ -1.88
LHX3Q9UBR4 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.3□□□□□ -1.88
LHX3Q9UBR4 AC087481.2-201ENST00000565492 330 ntBASIC3.3□□□□□ -1.88
LHX3Q9UBR4 MIR2682-201ENST00000580305 110 ntBASIC3.3□□□□□ -1.88
LHX3Q9UBR4 AC245036.5-201ENST00000596330 847 ntBASIC3.3□□□□□ -1.88
LHX3Q9UBR4 BNIP3P26-201ENST00000600827 554 ntBASIC3.3□□□□□ -1.88
LHX3Q9UBR4 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.3□□□□□ -1.88
LHX3Q9UBR4 AC010738.1-201ENST00000604970 987 ntBASIC3.3□□□□□ -1.88
LHX3Q9UBR4 AC016877.3-201ENST00000606778 504 ntBASIC3.3□□□□□ -1.88
LHX3Q9UBR4 AC012531.5-201ENST00000611375 151 ntBASIC3.3□□□□□ -1.88
LHX3Q9UBR4 AL157817.1-201ENST00000614264 790 ntBASIC3.3□□□□□ -1.88
LHX3Q9UBR4 AC006213.4-201ENST00000616184 634 ntBASIC3.3□□□□□ -1.88
LHX3Q9UBR4 MIR1322-201ENST00000638013 71 ntBASIC3.3□□□□□ -1.88
LHX3Q9UBR4 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
LHX3Q9UBR4 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
LHX3Q9UBR4 PWAR6-201ENST00000552334 4618 ntBASIC3.3□□□□□ -1.88
LHX3Q9UBR4 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.3□□□□□ -1.88
LHX3Q9UBR4 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.3□□□□□ -1.88
LHX3Q9UBR4 AF127577.6-201ENST00000623352 2191 ntBASIC3.29□□□□□ -1.88
LHX3Q9UBR4 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.29□□□□□ -1.88
LHX3Q9UBR4 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
LHX3Q9UBR4 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.29□□□□□ -1.88
LHX3Q9UBR4 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.29□□□□□ -1.88
LHX3Q9UBR4 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC3.29□□□□□ -1.88
LHX3Q9UBR4 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
LHX3Q9UBR4 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
LHX3Q9UBR4 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.29□□□□□ -1.88
LHX3Q9UBR4 RNU6-560P-201ENST00000364007 108 ntBASIC3.29□□□□□ -1.88
LHX3Q9UBR4 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.29□□□□□ -1.88
LHX3Q9UBR4 Y_RNA.408-201ENST00000383987 102 ntBASIC3.29□□□□□ -1.88
LHX3Q9UBR4 SNORD51-201ENST00000384320 80 ntBASIC3.29□□□□□ -1.88
LHX3Q9UBR4 MIR184-201ENST00000384962 84 ntBASIC3.29□□□□□ -1.88
LHX3Q9UBR4 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
LHX3Q9UBR4 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
LHX3Q9UBR4 RNU4-22P-201ENST00000411058 166 ntBASIC3.29□□□□□ -1.88
LHX3Q9UBR4 AC092447.6-201ENST00000414578 210 ntBASIC3.29□□□□□ -1.88
LHX3Q9UBR4 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.29□□□□□ -1.88
LHX3Q9UBR4 AC106883.1-201ENST00000418805 562 ntBASIC3.29□□□□□ -1.88
LHX3Q9UBR4 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC3.29□□□□□ -1.88
LHX3Q9UBR4 HMGB3P11-201ENST00000440127 604 ntBASIC3.29□□□□□ -1.88
LHX3Q9UBR4 MTND2P20-201ENST00000440805 661 ntBASIC3.29□□□□□ -1.88
LHX3Q9UBR4 RPL23AP76-201ENST00000441860 458 ntBASIC3.29□□□□□ -1.88
LHX3Q9UBR4 ZNF886P-201ENST00000450781 723 ntBASIC3.29□□□□□ -1.88
LHX3Q9UBR4 OFD1P3Y-201ENST00000453312 783 ntBASIC3.29□□□□□ -1.88
LHX3Q9UBR4 HMGB1P15-201ENST00000453854 435 ntBASIC3.29□□□□□ -1.88
LHX3Q9UBR4 CEACAMP4-201ENST00000457676 421 ntBASIC3.29□□□□□ -1.88
LHX3Q9UBR4 AC026410.2-201ENST00000460281 156 ntBASIC3.29□□□□□ -1.88
LHX3Q9UBR4 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.29□□□□□ -1.88
LHX3Q9UBR4 SNRPGP3-201ENST00000469405 227 ntBASIC3.29□□□□□ -1.88
LHX3Q9UBR4 AC087312.1-201ENST00000471411 480 ntBASIC3.29□□□□□ -1.88
LHX3Q9UBR4 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC3.29□□□□□ -1.88
LHX3Q9UBR4 MTCO3P35-201ENST00000485582 781 ntBASIC3.29□□□□□ -1.88
LHX3Q9UBR4 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC3.29□□□□□ -1.88
LHX3Q9UBR4 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC3.29□□□□□ -1.88
LHX3Q9UBR4 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC3.29□□□□□ -1.88
LHX3Q9UBR4 AC008837.2-201ENST00000513076 418 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms