Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 MAPK10-320ENST00000641462 6696 ntBASIC4.23□□□□□ -1.73
VSX1Q9NZR4 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 RNU6-694P-201ENST00000364071 147 ntBASIC4.23□□□□□ -1.73
VSX1Q9NZR4 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 RNU6-606P-201ENST00000384721 111 ntBASIC4.23□□□□□ -1.73
VSX1Q9NZR4 U3.29-201ENST00000391296 212 ntBASIC4.23□□□□□ -1.73
VSX1Q9NZR4 AL356776.1-201ENST00000406574 447 ntBASIC4.23□□□□□ -1.73
VSX1Q9NZR4 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 RPS15AP12-201ENST00000419498 388 ntBASIC4.23□□□□□ -1.73
VSX1Q9NZR4 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 LYPLA1P1-201ENST00000434514 622 ntBASIC4.23□□□□□ -1.73
VSX1Q9NZR4 TIMM9P1-201ENST00000436122 256 ntBASIC4.23□□□□□ -1.73
VSX1Q9NZR4 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 AC114755.5-201ENST00000447760 831 ntBASIC4.23□□□□□ -1.73
VSX1Q9NZR4 AC010733.1-201ENST00000451515 401 ntBASIC4.23□□□□□ -1.73
VSX1Q9NZR4 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 AURKAPS2-201ENST00000454983 333 ntBASIC4.23□□□□□ -1.73
VSX1Q9NZR4 AL356010.1-201ENST00000456364 102 ntBASIC4.23□□□□□ -1.73
VSX1Q9NZR4 RNU6-420P-201ENST00000458780 107 ntBASIC4.23□□□□□ -1.73
VSX1Q9NZR4 SCARNA10-201ENST00000459255 330 ntBASIC4.23□□□□□ -1.73
VSX1Q9NZR4 AC087385.1-201ENST00000475062 312 ntBASIC4.23□□□□□ -1.73
VSX1Q9NZR4 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.23□□□□□ -1.73
VSX1Q9NZR4 MTND3P22-201ENST00000510932 243 ntBASIC4.23□□□□□ -1.73
VSX1Q9NZR4 RNU1-6P-201ENST00000516290 144 ntBASIC4.23□□□□□ -1.73
VSX1Q9NZR4 SCARNA21.2-201ENST00000516600 166 ntBASIC4.23□□□□□ -1.73
VSX1Q9NZR4 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 CENPUP1-201ENST00000526649 1202 ntBASIC4.23□□□□□ -1.73
VSX1Q9NZR4 PHBP17-201ENST00000528576 541 ntBASIC4.23□□□□□ -1.73
VSX1Q9NZR4 OR10G5P-201ENST00000532733 358 ntBASIC4.23□□□□□ -1.73
VSX1Q9NZR4 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 RPL21P12-201ENST00000559810 515 ntBASIC4.23□□□□□ -1.73
VSX1Q9NZR4 AC009117.1-201ENST00000563948 554 ntBASIC4.23□□□□□ -1.73
VSX1Q9NZR4 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 AC098848.2-201ENST00000588023 330 ntBASIC4.23□□□□□ -1.73
VSX1Q9NZR4 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 AC005261.5-201ENST00000596280 355 ntBASIC4.23□□□□□ -1.73
VSX1Q9NZR4 AC087763.1-201ENST00000603391 286 ntBASIC4.23□□□□□ -1.73
VSX1Q9NZR4 BX323046.1-201ENST00000610145 535 ntBASIC4.23□□□□□ -1.73
VSX1Q9NZR4 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 Y_RNA.804-201ENST00000615262 101 ntBASIC4.23□□□□□ -1.73
VSX1Q9NZR4 YWHAEP7-203ENST00000622054 312 ntBASIC4.23□□□□□ -1.73
VSX1Q9NZR4 AC091905.4-201ENST00000623432 202 ntBASIC4.23□□□□□ -1.73
VSX1Q9NZR4 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
VSX1Q9NZR4 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC4.22□□□□□ -1.73
VSX1Q9NZR4 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.22□□□□□ -1.73
VSX1Q9NZR4 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
VSX1Q9NZR4 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
VSX1Q9NZR4 Y_RNA.61-201ENST00000362835 102 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 Y_RNA.157-201ENST00000363638 102 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 Y_RNA.279-201ENST00000364763 95 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 RNY4P16-201ENST00000364768 94 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
VSX1Q9NZR4 RN7SKP213-201ENST00000410746 298 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 AL138785.1-201ENST00000425821 331 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 USP9YP9-201ENST00000429406 715 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 PSMA2P3-201ENST00000429685 675 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 RPL35AP22-201ENST00000436855 335 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 PRPF38AP2-201ENST00000438179 851 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 AC112498.1-201ENST00000444401 332 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 Z80107.2-201ENST00000445127 392 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC4.22□□□□□ -1.73
VSX1Q9NZR4 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
VSX1Q9NZR4 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.22□□□□□ -1.73
VSX1Q9NZR4 FDX1P2-201ENST00000450769 375 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC4.22□□□□□ -1.73
VSX1Q9NZR4 RPS5P7-201ENST00000456664 608 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC4.22□□□□□ -1.73
VSX1Q9NZR4 RNU7-59P-201ENST00000459101 61 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 snoU13.20-201ENST00000459180 104 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 RPSAP50-201ENST00000481955 852 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
VSX1Q9NZR4 ACTR3BP4-201ENST00000503033 1244 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC4.22□□□□□ -1.73
VSX1Q9NZR4 TMEM248P1-201ENST00000510579 951 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC4.22□□□□□ -1.73
VSX1Q9NZR4 SNORA40.12-201ENST00000516329 111 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 SNORD60.2-201ENST00000516883 86 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 HMGN1P28-201ENST00000521340 364 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.22□□□□□ -1.73
VSX1Q9NZR4 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms