Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.31□□□□□ -1.88
CCDC28BQ9BUN5 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC28BQ9BUN5 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC28BQ9BUN5 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.31□□□□□ -1.88
CCDC28BQ9BUN5 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
CCDC28BQ9BUN5 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 MTND4P34-201ENST00000572715 1371 ntBASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 SNORD9-201ENST00000362566 104 ntBASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 RNU6-931P-201ENST00000363850 107 ntBASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 RNU6-1243P-201ENST00000364028 107 ntBASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 MIR607-201ENST00000385241 96 ntBASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 AL356131.1-201ENST00000405826 414 ntBASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 RN7SKP156-201ENST00000410308 342 ntBASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 DBIP2-201ENST00000419076 262 ntBASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 MTCYBP34-201ENST00000439552 670 ntBASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 RPL23AP16-201ENST00000441715 421 ntBASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 RSL24D1P3-201ENST00000449255 495 ntBASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 AL109741.2-201ENST00000455561 343 ntBASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 RN7SL75P-201ENST00000461926 281 ntBASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 RPS3AP22-201ENST00000488297 769 ntBASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 MTND4LP22-201ENST00000508209 276 ntBASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 ZNF705CP-201ENST00000530515 889 ntBASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 CR383656.6-201ENST00000550518 394 ntBASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 LSM6P2-201ENST00000552208 177 ntBASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 SNORD39.3-201ENST00000584451 71 ntBASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 AL139344.1-201ENST00000605228 195 ntBASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 AC019176.2-201ENST00000611579 315 ntBASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 AC084035.1-201ENST00000634543 607 ntBASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
CCDC28BQ9BUN5 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 RNA5SP283-201ENST00000365604 119 ntBASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 RNU2-28P-201ENST00000410457 189 ntBASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 MTND4P20-201ENST00000424125 869 ntBASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 AC008065.1-201ENST00000428525 348 ntBASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 OR6K5P-201ENST00000447050 945 ntBASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 MTND2P19-201ENST00000449129 1012 ntBASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 TRBV26-201ENST00000456572 344 ntBASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 RNF138P1-201ENST00000502765 546 ntBASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 HMGB1P28-201ENST00000507778 552 ntBASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 MTND1P22-201ENST00000510572 951 ntBASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 RNA5SP217-201ENST00000515959 91 ntBASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 RNU1-143P-201ENST00000516296 146 ntBASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 SNORA70.18-201ENST00000516696 98 ntBASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 AC090502.2-201ENST00000549267 280 ntBASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 SYF2P1-201ENST00000550658 413 ntBASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 CFL2-206ENST00000556161 546 ntTSL 4 BASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 AC053481.4-201ENST00000583164 216 ntBASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.29□□□□□ -1.88
CCDC28BQ9BUN5 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 113 ms