Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC037471.2-201ENST00000564941 598 ntBASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 MIR5195-201ENST00000583555 115 ntBASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 AC008751.2-201ENST00000597885 980 ntBASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 AC018638.7-201ENST00000605836 1114 ntBASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 AL442067.2-201ENST00000614033 363 ntBASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 AC025588.4-201ENST00000615802 908 ntBASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 AP000553.6-201ENST00000641242 118 ntBASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 AL365440.1-201ENST00000436135 2167 ntBASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 AC097714.1-201ENST00000511272 1647 ntBASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 OR5H2-201ENST00000355273 945 ntBASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 MT-TC-201ENST00000387405 66 ntBASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 AF228730.1-201ENST00000397972 663 ntBASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 USP9YP33-201ENST00000412220 421 ntBASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 HMGB3P20-201ENST00000417997 600 ntBASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 FNDC3CP-201ENST00000420795 1155 ntBASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 AC245054.1-201ENST00000420944 258 ntBASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 MTND5P25-201ENST00000430499 799 ntBASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 CKS1BP5-201ENST00000434172 273 ntBASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 USP9YP35-201ENST00000435696 412 ntBASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 AC127537.2-201ENST00000439258 465 ntBASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 HMGB3P22-202ENST00000451823 572 ntBASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 RPL5P23-201ENST00000496040 868 ntBASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 RN7SKP209-201ENST00000516888 304 ntBASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 AC103843.2-201ENST00000530523 682 ntBASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 AC008011.1-201ENST00000545989 227 ntBASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 AC090616.5-202ENST00000582111 297 ntBASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 AL031985.2-201ENST00000600955 480 ntBASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 AC021171.1-201ENST00000603137 706 ntBASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 AL596327.1-201ENST00000603629 213 ntBASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 IGHV3-29-201ENST00000604817 344 ntBASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 AL160281.1-201ENST00000605307 311 ntBASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 AL139418.1-201ENST00000613613 177 ntBASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 AL357080.1-201ENST00000617394 239 ntBASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 AC018816.2-201ENST00000621460 353 ntBASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 AC097655.1-201ENST00000635075 318 ntBASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 AC138649.5-201ENST00000637456 137 ntBASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC3Q9BQI4 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 U3.29-201ENST00000391296 212 ntBASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 AL356131.1-201ENST00000405826 414 ntBASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 BX842559.1-201ENST00000419615 532 ntBASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 AL158156.1-201ENST00000422509 473 ntBASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 MTND4P20-201ENST00000424125 869 ntBASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 AL035410.1-201ENST00000427409 427 ntBASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 OFD1P12Y-201ENST00000427963 1207 ntBASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 AC097713.2-201ENST00000430199 356 ntBASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 OFD1P13Y-201ENST00000431179 1232 ntBASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 AL354941.1-201ENST00000438600 464 ntBASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 AL445669.2-201ENST00000454425 421 ntBASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms