Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC2.01□□□□□ -2.09
VPS13AQ96RL7 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC2.01□□□□□ -2.09
VPS13AQ96RL7 HMGN2P47-201ENST00000559378 272 ntBASIC2.01□□□□□ -2.09
VPS13AQ96RL7 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC2.01□□□□□ -2.09
VPS13AQ96RL7 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC2.01□□□□□ -2.09
VPS13AQ96RL7 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
VPS13AQ96RL7 RNU6-356P-201ENST00000384140 107 ntBASIC2.01□□□□□ -2.09
VPS13AQ96RL7 UQCRFS1P3-201ENST00000407697 385 ntBASIC2.01□□□□□ -2.09
VPS13AQ96RL7 MIR1183-201ENST00000408856 89 ntBASIC2.01□□□□□ -2.09
VPS13AQ96RL7 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC2.01□□□□□ -2.09
VPS13AQ96RL7 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.01□□□□□ -2.09
VPS13AQ96RL7 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC2.01□□□□□ -2.09
VPS13AQ96RL7 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
VPS13AQ96RL7 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
VPS13AQ96RL7 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
VPS13AQ96RL7 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC2□□□□□ -2.09
VPS13AQ96RL7 LSM5-205ENST00000409952 687 ntTSL 4 BASIC2□□□□□ -2.09
VPS13AQ96RL7 GAPDHP27-201ENST00000447427 1020 ntBASIC2□□□□□ -2.09
VPS13AQ96RL7 RNA5SP61-201ENST00000516453 100 ntBASIC2□□□□□ -2.09
VPS13AQ96RL7 MIR4285-201ENST00000581001 85 ntBASIC2□□□□□ -2.09
VPS13AQ96RL7 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2□□□□□ -2.09
VPS13AQ96RL7 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC2□□□□□ -2.09
VPS13AQ96RL7 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC2□□□□□ -2.09
VPS13AQ96RL7 AC093536.2-201ENST00000565257 1406 ntBASIC2□□□□□ -2.09
VPS13AQ96RL7 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2□□□□□ -2.09
VPS13AQ96RL7 Y_RNA.354-201ENST00000365448 111 ntBASIC2□□□□□ -2.09
VPS13AQ96RL7 OR5H15-201ENST00000383696 930 ntBASIC2□□□□□ -2.09
VPS13AQ96RL7 RNU6-342P-201ENST00000384521 104 ntBASIC2□□□□□ -2.09
VPS13AQ96RL7 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC2□□□□□ -2.09
VPS13AQ96RL7 MIR708-201ENST00000390708 88 ntBASIC2□□□□□ -2.09
VPS13AQ96RL7 AC234782.4-201ENST00000417646 1048 ntBASIC2□□□□□ -2.09
VPS13AQ96RL7 RPS29P12-201ENST00000460178 152 ntBASIC2□□□□□ -2.09
VPS13AQ96RL7 AC140059.1-201ENST00000489238 361 ntBASIC2□□□□□ -2.09
VPS13AQ96RL7 AL159169.1-201ENST00000421119 127 ntBASIC2□□□□□ -2.09
VPS13AQ96RL7 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2□□□□□ -2.09
VPS13AQ96RL7 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2□□□□□ -2.09
VPS13AQ96RL7 RPS7P5-201ENST00000441482 581 ntBASIC2□□□□□ -2.09
VPS13AQ96RL7 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2□□□□□ -2.09
VPS13AQ96RL7 AL591719.1-201ENST00000444669 744 ntBASIC2□□□□□ -2.09
VPS13AQ96RL7 RNU7-170P-201ENST00000459303 61 ntBASIC2□□□□□ -2.09
VPS13AQ96RL7 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC2□□□□□ -2.09
VPS13AQ96RL7 TMEM248P1-201ENST00000510579 951 ntBASIC2□□□□□ -2.09
VPS13AQ96RL7 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC2□□□□□ -2.09
VPS13AQ96RL7 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC2□□□□□ -2.09
VPS13AQ96RL7 AC012360.2-201ENST00000609349 391 ntBASIC2□□□□□ -2.09
VPS13AQ96RL7 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC1.99□□□□□ -2.09
VPS13AQ96RL7 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.99□□□□□ -2.09
VPS13AQ96RL7 AC104332.2-201ENST00000429959 156 ntBASIC1.99□□□□□ -2.09
VPS13AQ96RL7 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.99□□□□□ -2.09
VPS13AQ96RL7 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC1.99□□□□□ -2.09
VPS13AQ96RL7 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC1.99□□□□□ -2.09
VPS13AQ96RL7 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC1.99□□□□□ -2.09
VPS13AQ96RL7 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC1.99□□□□□ -2.09
VPS13AQ96RL7 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC1.99□□□□□ -2.09
VPS13AQ96RL7 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC1.99□□□□□ -2.09
VPS13AQ96RL7 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
VPS13AQ96RL7 AL358453.1-201ENST00000422522 250 ntBASIC1.99□□□□□ -2.09
VPS13AQ96RL7 AC025281.1-201ENST00000567026 265 ntBASIC1.99□□□□□ -2.09
VPS13AQ96RL7 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC1.99□□□□□ -2.09
VPS13AQ96RL7 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC1.99□□□□□ -2.09
VPS13AQ96RL7 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC1.99□□□□□ -2.09
VPS13AQ96RL7 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC1.99□□□□□ -2.09
VPS13AQ96RL7 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
VPS13AQ96RL7 Y_RNA.205-201ENST00000364128 113 ntBASIC1.98□□□□□ -2.09
VPS13AQ96RL7 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
VPS13AQ96RL7 AL590762.3-201ENST00000436372 640 ntBASIC1.98□□□□□ -2.09
VPS13AQ96RL7 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC1.98□□□□□ -2.09
VPS13AQ96RL7 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
VPS13AQ96RL7 XKRY-201ENST00000510392 1100 ntBASIC1.98□□□□□ -2.09
VPS13AQ96RL7 AC104574.1-201ENST00000561182 925 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
VPS13AQ96RL7 AL122125.1-201ENST00000616999 600 ntBASIC1.98□□□□□ -2.09
VPS13AQ96RL7 LINC02477-201ENST00000512652 1417 ntTSL 5 BASIC1.98□□□□□ -2.09
VPS13AQ96RL7 MTND5P23-201ENST00000430812 1655 ntBASIC1.98□□□□□ -2.09
VPS13AQ96RL7 RNU6-1-201ENST00000383898 107 ntBASIC1.98□□□□□ -2.09
VPS13AQ96RL7 RNU6-42P-201ENST00000384165 107 ntBASIC1.98□□□□□ -2.09
VPS13AQ96RL7 RNU6-36P-201ENST00000384172 107 ntBASIC1.98□□□□□ -2.09
VPS13AQ96RL7 RNU6-4P-201ENST00000384205 107 ntBASIC1.98□□□□□ -2.09
VPS13AQ96RL7 RNU6-5P-201ENST00000384238 107 ntBASIC1.98□□□□□ -2.09
VPS13AQ96RL7 RNU6-3P-201ENST00000384314 107 ntBASIC1.98□□□□□ -2.09
VPS13AQ96RL7 RNU6-2-201ENST00000384627 107 ntBASIC1.98□□□□□ -2.09
VPS13AQ96RL7 RNU6-9-201ENST00000384776 107 ntBASIC1.98□□□□□ -2.09
VPS13AQ96RL7 RNU6-33P-201ENST00000384793 107 ntBASIC1.98□□□□□ -2.09
VPS13AQ96RL7 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC1.98□□□□□ -2.09
VPS13AQ96RL7 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC1.98□□□□□ -2.09
VPS13AQ96RL7 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
VPS13AQ96RL7 RNA5SP220-201ENST00000516298 104 ntBASIC1.98□□□□□ -2.09
VPS13AQ96RL7 MIR4452-201ENST00000583004 71 ntBASIC1.98□□□□□ -2.09
VPS13AQ96RL7 AL645944.1-201ENST00000603857 493 ntBASIC1.98□□□□□ -2.09
VPS13AQ96RL7 RNU6-6P-201ENST00000606623 107 ntBASIC1.98□□□□□ -2.09
VPS13AQ96RL7 RNU1-57P-201ENST00000384491 166 ntBASIC1.98□□□□□ -2.09
VPS13AQ96RL7 AL137159.1-201ENST00000452808 512 ntBASIC1.98□□□□□ -2.09
VPS13AQ96RL7 AC092798.1-201ENST00000458542 409 ntBASIC1.98□□□□□ -2.09
VPS13AQ96RL7 MTAPP1-201ENST00000489154 819 ntBASIC1.98□□□□□ -2.09
VPS13AQ96RL7 OR4H12P-201ENST00000556269 907 ntBASIC1.98□□□□□ -2.09
VPS13AQ96RL7 AL354943.1-201ENST00000572103 781 ntBASIC1.98□□□□□ -2.09
VPS13AQ96RL7 AC006378.2-201ENST00000623178 2476 ntBASIC1.98□□□□□ -2.09
VPS13AQ96RL7 API5P2-201ENST00000397055 1498 ntBASIC1.98□□□□□ -2.09
VPS13AQ96RL7 MTND4P35-201ENST00000604257 1375 ntBASIC1.97□□□□□ -2.09
VPS13AQ96RL7 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
VPS13AQ96RL7 RNU2-6P-201ENST00000411404 190 ntBASIC1.97□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 95.8 ms