Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 SSXP4-201ENST00000451349 245 ntBASIC2.54□□□□□ -2
LMX1AQ8TE12 MTND3P4-201ENST00000453537 303 ntBASIC2.54□□□□□ -2
LMX1AQ8TE12 HSPE1P6-201ENST00000479457 291 ntBASIC2.54□□□□□ -2
LMX1AQ8TE12 MTCO3P35-201ENST00000485582 781 ntBASIC2.54□□□□□ -2
LMX1AQ8TE12 MTND4LP22-201ENST00000508209 276 ntBASIC2.54□□□□□ -2
LMX1AQ8TE12 AC016065.2-201ENST00000514530 444 ntBASIC2.54□□□□□ -2
LMX1AQ8TE12 RNA5SP282-201ENST00000516355 108 ntBASIC2.54□□□□□ -2
LMX1AQ8TE12 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC2.54□□□□□ -2
LMX1AQ8TE12 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC2.54□□□□□ -2
LMX1AQ8TE12 AL133271.1-201ENST00000538229 291 ntBASIC2.54□□□□□ -2
LMX1AQ8TE12 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC2.54□□□□□ -2
LMX1AQ8TE12 AC007621.1-201ENST00000604544 437 ntBASIC2.54□□□□□ -2
LMX1AQ8TE12 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC2.54□□□□□ -2
LMX1AQ8TE12 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
LMX1AQ8TE12 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
LMX1AQ8TE12 ELF2P3-201ENST00000445099 1506 ntBASIC2.53□□□□□ -2
LMX1AQ8TE12 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC2.53□□□□□ -2
LMX1AQ8TE12 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
LMX1AQ8TE12 ZNF37BP-203ENST00000452306 1352 ntBASIC2.53□□□□□ -2
LMX1AQ8TE12 AC009501.3-201ENST00000605001 1352 ntBASIC2.53□□□□□ -2
LMX1AQ8TE12 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.53□□□□□ -2
LMX1AQ8TE12 AC109315.1-201ENST00000584143 1347 ntBASIC2.53□□□□□ -2
LMX1AQ8TE12 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
LMX1AQ8TE12 TAF9BP2-201ENST00000400856 499 ntBASIC2.53□□□□□ -2
LMX1AQ8TE12 YPEL5P1-201ENST00000419731 367 ntBASIC2.53□□□□□ -2
LMX1AQ8TE12 AC093151.1-201ENST00000427711 313 ntBASIC2.53□□□□□ -2
LMX1AQ8TE12 LAMTOR3P1-201ENST00000428620 370 ntBASIC2.53□□□□□ -2
LMX1AQ8TE12 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC2.53□□□□□ -2
LMX1AQ8TE12 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC2.53□□□□□ -2
LMX1AQ8TE12 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC2.53□□□□□ -2
LMX1AQ8TE12 RPL23AP31-201ENST00000456160 467 ntBASIC2.53□□□□□ -2
LMX1AQ8TE12 AL590639.1-201ENST00000456484 337 ntBASIC2.53□□□□□ -2
LMX1AQ8TE12 AC091179.1-201ENST00000461606 579 ntBASIC2.53□□□□□ -2
LMX1AQ8TE12 NFU1-207ENST00000462320 558 ntTSL 4 BASIC2.53□□□□□ -2
LMX1AQ8TE12 HMGB1P25-201ENST00000468402 607 ntBASIC2.53□□□□□ -2
LMX1AQ8TE12 RPL7P5-201ENST00000471472 736 ntBASIC2.53□□□□□ -2
LMX1AQ8TE12 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC2.53□□□□□ -2
LMX1AQ8TE12 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC2.53□□□□□ -2
LMX1AQ8TE12 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.53□□□□□ -2
LMX1AQ8TE12 RN7SKP96-201ENST00000516948 297 ntBASIC2.53□□□□□ -2
LMX1AQ8TE12 AC100870.1-201ENST00000522035 505 ntBASIC2.53□□□□□ -2
LMX1AQ8TE12 AP001207.1-201ENST00000524051 481 ntBASIC2.53□□□□□ -2
LMX1AQ8TE12 OR5AK3P-201ENST00000527486 1297 ntBASIC2.53□□□□□ -2
LMX1AQ8TE12 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC2.53□□□□□ -2
LMX1AQ8TE12 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC2.53□□□□□ -2
LMX1AQ8TE12 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC2.53□□□□□ -2
LMX1AQ8TE12 DNAJC19P3-201ENST00000594491 331 ntBASIC2.53□□□□□ -2
LMX1AQ8TE12 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC2.53□□□□□ -2
LMX1AQ8TE12 AC079610.2-201ENST00000604818 690 ntBASIC2.53□□□□□ -2
LMX1AQ8TE12 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.53□□□□□ -2
LMX1AQ8TE12 U73479.1-201ENST00000618062 168 ntBASIC2.53□□□□□ -2
LMX1AQ8TE12 AC090617.9-201ENST00000623751 147 ntBASIC2.53□□□□□ -2
LMX1AQ8TE12 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.53□□□□□ -2
LMX1AQ8TE12 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
LMX1AQ8TE12 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC2.53□□□□□ -2
LMX1AQ8TE12 AC103988.1-201ENST00000566382 2177 ntBASIC2.53□□□□□ -2
LMX1AQ8TE12 AP001350.1-201ENST00000601906 1524 ntBASIC2.52□□□□□ -2.01
LMX1AQ8TE12 THUMPD3P1-201ENST00000506556 1480 ntBASIC2.52□□□□□ -2.01
LMX1AQ8TE12 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC2.52□□□□□ -2.01
LMX1AQ8TE12 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
LMX1AQ8TE12 SNORD115-48-201ENST00000364764 76 ntBASIC2.52□□□□□ -2.01
LMX1AQ8TE12 PRRC2CP1-201ENST00000404428 159 ntBASIC2.52□□□□□ -2.01
LMX1AQ8TE12 ATF1P1-201ENST00000406040 927 ntBASIC2.52□□□□□ -2.01
LMX1AQ8TE12 RNA5SP344-201ENST00000411081 104 ntBASIC2.52□□□□□ -2.01
LMX1AQ8TE12 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.52□□□□□ -2.01
LMX1AQ8TE12 USP9YP20-201ENST00000419224 558 ntBASIC2.52□□□□□ -2.01
LMX1AQ8TE12 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC2.52□□□□□ -2.01
LMX1AQ8TE12 CR848007.2-201ENST00000424918 787 ntBASIC2.52□□□□□ -2.01
LMX1AQ8TE12 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC2.52□□□□□ -2.01
LMX1AQ8TE12 RPL21P66-201ENST00000426566 466 ntBASIC2.52□□□□□ -2.01
LMX1AQ8TE12 MTND4LP14-201ENST00000429447 288 ntBASIC2.52□□□□□ -2.01
LMX1AQ8TE12 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC2.52□□□□□ -2.01
LMX1AQ8TE12 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC2.52□□□□□ -2.01
LMX1AQ8TE12 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.52□□□□□ -2.01
LMX1AQ8TE12 HSPE1P28-201ENST00000443139 211 ntBASIC2.52□□□□□ -2.01
LMX1AQ8TE12 ELOCP13-201ENST00000443934 329 ntBASIC2.52□□□□□ -2.01
LMX1AQ8TE12 AC097499.1-201ENST00000444277 208 ntBASIC2.52□□□□□ -2.01
LMX1AQ8TE12 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC2.52□□□□□ -2.01
LMX1AQ8TE12 AC104308.1-201ENST00000454621 333 ntBASIC2.52□□□□□ -2.01
LMX1AQ8TE12 OR6K1P-201ENST00000456766 971 ntBASIC2.52□□□□□ -2.01
LMX1AQ8TE12 CABYRP1-201ENST00000465493 1045 ntBASIC2.52□□□□□ -2.01
LMX1AQ8TE12 OR9N1P-202ENST00000494289 481 ntBASIC2.52□□□□□ -2.01
LMX1AQ8TE12 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC2.52□□□□□ -2.01
LMX1AQ8TE12 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC2.52□□□□□ -2.01
LMX1AQ8TE12 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC2.52□□□□□ -2.01
LMX1AQ8TE12 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC2.52□□□□□ -2.01
LMX1AQ8TE12 RNA5SP320-201ENST00000516263 124 ntBASIC2.52□□□□□ -2.01
LMX1AQ8TE12 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC2.52□□□□□ -2.01
LMX1AQ8TE12 AC104115.2-201ENST00000523026 687 ntBASIC2.52□□□□□ -2.01
LMX1AQ8TE12 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC2.52□□□□□ -2.01
LMX1AQ8TE12 AF279873.1-201ENST00000523393 313 ntBASIC2.52□□□□□ -2.01
LMX1AQ8TE12 AC128657.1-201ENST00000549459 145 ntBASIC2.52□□□□□ -2.01
LMX1AQ8TE12 CKS1BP1-201ENST00000555221 240 ntBASIC2.52□□□□□ -2.01
LMX1AQ8TE12 AC005951.1-201ENST00000576706 485 ntBASIC2.52□□□□□ -2.01
LMX1AQ8TE12 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC2.52□□□□□ -2.01
LMX1AQ8TE12 AC018618.2-201ENST00000604770 446 ntBASIC2.52□□□□□ -2.01
LMX1AQ8TE12 AC100814.1-201ENST00000606963 623 ntBASIC2.52□□□□□ -2.01
LMX1AQ8TE12 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.52□□□□□ -2.01
LMX1AQ8TE12 AL590808.1-201ENST00000618696 141 ntBASIC2.52□□□□□ -2.01
LMX1AQ8TE12 AC025034.2-201ENST00000623264 286 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 128 ms