Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC126182.1-201ENST00000478134 357 ntBASIC2.49□□□□□ -2.01
FOXA1P55317 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
FOXA1P55317 RNU4-60P-201ENST00000517239 135 ntBASIC2.49□□□□□ -2.01
FOXA1P55317 AC104986.1-201ENST00000517978 436 ntBASIC2.49□□□□□ -2.01
FOXA1P55317 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.49□□□□□ -2.01
FOXA1P55317 HMGB1P41-201ENST00000520234 440 ntBASIC2.49□□□□□ -2.01
FOXA1P55317 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC2.49□□□□□ -2.01
FOXA1P55317 SERPINE4P-201ENST00000554978 281 ntBASIC2.49□□□□□ -2.01
FOXA1P55317 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC2.49□□□□□ -2.01
FOXA1P55317 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.49□□□□□ -2.01
FOXA1P55317 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC2.49□□□□□ -2.01
FOXA1P55317 ZNF92P2-201ENST00000600543 1059 ntBASIC2.49□□□□□ -2.01
FOXA1P55317 AL137843.1-201ENST00000605078 385 ntBASIC2.49□□□□□ -2.01
FOXA1P55317 AC073569.3-201ENST00000619055 682 ntBASIC2.49□□□□□ -2.01
FOXA1P55317 AP003400.6-201ENST00000624698 740 ntBASIC2.49□□□□□ -2.01
FOXA1P55317 AC017104.5-201ENST00000637647 639 ntBASIC2.49□□□□□ -2.01
FOXA1P55317 AC116096.1-201ENST00000566804 2314 ntBASIC2.49□□□□□ -2.01
FOXA1P55317 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC2.49□□□□□ -2.01
FOXA1P55317 NSRP1P1-201ENST00000444067 1693 ntBASIC2.49□□□□□ -2.01
FOXA1P55317 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
FOXA1P55317 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.48□□□□□ -2.01
FOXA1P55317 AC011978.2-201ENST00000569835 2054 ntBASIC2.48□□□□□ -2.01
FOXA1P55317 RNU6-650P-201ENST00000365658 111 ntBASIC2.48□□□□□ -2.01
FOXA1P55317 DEFA7P-201ENST00000382676 285 ntBASIC2.48□□□□□ -2.01
FOXA1P55317 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
FOXA1P55317 U3.26-201ENST00000391236 204 ntBASIC2.48□□□□□ -2.01
FOXA1P55317 AL360182.1-201ENST00000397433 468 ntBASIC2.48□□□□□ -2.01
FOXA1P55317 RPLP0P7-201ENST00000416050 667 ntBASIC2.48□□□□□ -2.01
FOXA1P55317 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
FOXA1P55317 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC2.48□□□□□ -2.01
FOXA1P55317 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC2.48□□□□□ -2.01
FOXA1P55317 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.48□□□□□ -2.01
FOXA1P55317 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC2.48□□□□□ -2.01
FOXA1P55317 AC104332.2-201ENST00000429959 156 ntBASIC2.48□□□□□ -2.01
FOXA1P55317 RPL21P112-201ENST00000434403 463 ntBASIC2.48□□□□□ -2.01
FOXA1P55317 YWHAZP8-201ENST00000436935 731 ntBASIC2.48□□□□□ -2.01
FOXA1P55317 AC004865.1-201ENST00000442276 1003 ntBASIC2.48□□□□□ -2.01
FOXA1P55317 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC2.48□□□□□ -2.01
FOXA1P55317 RPL23AP15-201ENST00000450202 459 ntBASIC2.48□□□□□ -2.01
FOXA1P55317 DNAJC19P8-201ENST00000452887 259 ntBASIC2.48□□□□□ -2.01
FOXA1P55317 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.48□□□□□ -2.01
FOXA1P55317 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC2.48□□□□□ -2.01
FOXA1P55317 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC2.48□□□□□ -2.01
FOXA1P55317 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC2.48□□□□□ -2.01
FOXA1P55317 KC877373.1-201ENST00000479066 408 ntBASIC2.48□□□□□ -2.01
FOXA1P55317 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
FOXA1P55317 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC2.48□□□□□ -2.01
FOXA1P55317 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC2.48□□□□□ -2.01
FOXA1P55317 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC2.48□□□□□ -2.01
FOXA1P55317 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC2.48□□□□□ -2.01
FOXA1P55317 AC008885.2-201ENST00000509506 930 ntBASIC2.48□□□□□ -2.01
FOXA1P55317 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC2.48□□□□□ -2.01
FOXA1P55317 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.48□□□□□ -2.01
FOXA1P55317 RGS4-207ENST00000527809 817 ntTSL 4 BASIC2.48□□□□□ -2.01
FOXA1P55317 AC243972.3-201ENST00000539655 198 ntBASIC2.48□□□□□ -2.01
FOXA1P55317 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
FOXA1P55317 SYF2P1-201ENST00000550658 413 ntBASIC2.48□□□□□ -2.01
FOXA1P55317 EIF4BP1-201ENST00000554881 351 ntBASIC2.48□□□□□ -2.01
FOXA1P55317 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.48□□□□□ -2.01
FOXA1P55317 AC104229.1-201ENST00000561364 255 ntBASIC2.48□□□□□ -2.01
FOXA1P55317 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC2.48□□□□□ -2.01
FOXA1P55317 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC2.48□□□□□ -2.01
FOXA1P55317 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC2.48□□□□□ -2.01
FOXA1P55317 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC2.48□□□□□ -2.01
FOXA1P55317 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC2.48□□□□□ -2.01
FOXA1P55317 RMST_10.1-201ENST00000616309 154 ntBASIC2.48□□□□□ -2.01
FOXA1P55317 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.48□□□□□ -2.01
FOXA1P55317 AL137790.1-201ENST00000634283 177 ntBASIC2.48□□□□□ -2.01
FOXA1P55317 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
FOXA1P55317 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.48□□□□□ -2.01
FOXA1P55317 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC2.48□□□□□ -2.01
FOXA1P55317 AC009487.2-201ENST00000420969 6821 ntBASIC2.48□□□□□ -2.01
FOXA1P55317 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
FOXA1P55317 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC2.47□□□□□ -2.01
FOXA1P55317 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
FOXA1P55317 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC2.47□□□□□ -2.01
FOXA1P55317 RNU6-1339P-201ENST00000363574 91 ntBASIC2.47□□□□□ -2.01
FOXA1P55317 MIR9-1-201ENST00000385198 89 ntBASIC2.47□□□□□ -2.01
FOXA1P55317 MIR607-201ENST00000385241 96 ntBASIC2.47□□□□□ -2.01
FOXA1P55317 MTND4P13-201ENST00000402078 1023 ntBASIC2.47□□□□□ -2.01
FOXA1P55317 AC080125.1-201ENST00000414888 684 ntBASIC2.47□□□□□ -2.01
FOXA1P55317 AC093422.3-201ENST00000428506 305 ntBASIC2.47□□□□□ -2.01
FOXA1P55317 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC2.47□□□□□ -2.01
FOXA1P55317 FABP5P3-201ENST00000437960 408 ntBASIC2.47□□□□□ -2.01
FOXA1P55317 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC2.47□□□□□ -2.01
FOXA1P55317 AL831737.1-201ENST00000441288 271 ntBASIC2.47□□□□□ -2.01
FOXA1P55317 RPS26P30-201ENST00000443431 335 ntBASIC2.47□□□□□ -2.01
FOXA1P55317 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC2.47□□□□□ -2.01
FOXA1P55317 AC233982.1-201ENST00000451247 436 ntBASIC2.47□□□□□ -2.01
FOXA1P55317 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC2.47□□□□□ -2.01
FOXA1P55317 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.47□□□□□ -2.01
FOXA1P55317 RNA5SP367-201ENST00000516557 118 ntBASIC2.47□□□□□ -2.01
FOXA1P55317 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC2.47□□□□□ -2.01
FOXA1P55317 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC2.47□□□□□ -2.01
FOXA1P55317 AC104115.2-201ENST00000523026 687 ntBASIC2.47□□□□□ -2.01
FOXA1P55317 OSBPL9P3-201ENST00000534523 595 ntBASIC2.47□□□□□ -2.01
FOXA1P55317 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC2.47□□□□□ -2.01
FOXA1P55317 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC2.47□□□□□ -2.01
FOXA1P55317 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.47□□□□□ -2.01
FOXA1P55317 ATP5F1P7-201ENST00000567330 760 ntBASIC2.47□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms