Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 MFF-206ENST00000392059 1710 ntTSL 5 BASIC5.37□□□□□ -1.55
LIG3P49916 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC5.37□□□□□ -1.55
LIG3P49916 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
LIG3P49916 RNU6-522P-201ENST00000364497 107 ntBASIC5.37□□□□□ -1.55
LIG3P49916 Y_RNA.530-201ENST00000384587 101 ntBASIC5.37□□□□□ -1.55
LIG3P49916 RNA5SP107-201ENST00000411358 122 ntBASIC5.37□□□□□ -1.55
LIG3P49916 RPS7P15-201ENST00000415804 584 ntBASIC5.37□□□□□ -1.55
LIG3P49916 AC068533.1-201ENST00000418542 415 ntBASIC5.37□□□□□ -1.55
LIG3P49916 AC108075.1-201ENST00000424692 529 ntBASIC5.37□□□□□ -1.55
LIG3P49916 PSMA2P3-201ENST00000429685 675 ntBASIC5.37□□□□□ -1.55
LIG3P49916 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.37□□□□□ -1.55
LIG3P49916 RPS11P7-201ENST00000442125 465 ntBASIC5.37□□□□□ -1.55
LIG3P49916 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.37□□□□□ -1.55
LIG3P49916 SNORD97-201ENST00000459187 142 ntBASIC5.37□□□□□ -1.55
LIG3P49916 SNORD19B-201ENST00000459623 84 ntBASIC5.37□□□□□ -1.55
LIG3P49916 MTCO1P29-201ENST00000496868 288 ntBASIC5.37□□□□□ -1.55
LIG3P49916 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC5.37□□□□□ -1.55
LIG3P49916 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC5.37□□□□□ -1.55
LIG3P49916 RN7SKP46-201ENST00000515942 234 ntBASIC5.37□□□□□ -1.55
LIG3P49916 HMGN1P28-201ENST00000521340 364 ntBASIC5.37□□□□□ -1.55
LIG3P49916 DEFB109D-201ENST00000529497 240 ntBASIC5.37□□□□□ -1.55
LIG3P49916 GSTP1P1-201ENST00000548078 319 ntBASIC5.37□□□□□ -1.55
LIG3P49916 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC5.37□□□□□ -1.55
LIG3P49916 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC5.37□□□□□ -1.55
LIG3P49916 MIR4424-201ENST00000585257 86 ntBASIC5.37□□□□□ -1.55
LIG3P49916 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC5.37□□□□□ -1.55
LIG3P49916 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC5.37□□□□□ -1.55
LIG3P49916 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
LIG3P49916 AC133644.2-201ENST00000608142 540 ntBASIC5.37□□□□□ -1.55
LIG3P49916 BX005214.3-202ENST00000619809 325 ntBASIC5.37□□□□□ -1.55
LIG3P49916 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC5.37□□□□□ -1.55
LIG3P49916 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC5.37□□□□□ -1.55
LIG3P49916 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
LIG3P49916 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC5.37□□□□□ -1.55
LIG3P49916 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
LIG3P49916 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC5.37□□□□□ -1.55
LIG3P49916 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
LIG3P49916 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
LIG3P49916 AC000123.3-201ENST00000624029 4975 ntBASIC5.36□□□□□ -1.55
LIG3P49916 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC5.36□□□□□ -1.55
LIG3P49916 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
LIG3P49916 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC5.36□□□□□ -1.55
LIG3P49916 CARF-208ENST00000428585 2513 ntTSL 2 BASIC5.36□□□□□ -1.55
LIG3P49916 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.36□□□□□ -1.55
LIG3P49916 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
LIG3P49916 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
LIG3P49916 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
LIG3P49916 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
LIG3P49916 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
LIG3P49916 RNU6-1013P-201ENST00000384180 107 ntBASIC5.36□□□□□ -1.55
LIG3P49916 HSPA8P15-201ENST00000401676 786 ntBASIC5.36□□□□□ -1.55
LIG3P49916 MIR1250-201ENST00000408098 113 ntBASIC5.36□□□□□ -1.55
LIG3P49916 RN7SKP125-201ENST00000410481 302 ntBASIC5.36□□□□□ -1.55
LIG3P49916 CYCSP10-201ENST00000417973 294 ntBASIC5.36□□□□□ -1.55
LIG3P49916 AL139148.1-201ENST00000427122 680 ntBASIC5.36□□□□□ -1.55
LIG3P49916 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC5.36□□□□□ -1.55
LIG3P49916 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC5.36□□□□□ -1.55
LIG3P49916 AC005094.1-201ENST00000440420 368 ntBASIC5.36□□□□□ -1.55
LIG3P49916 RPL23AP43-201ENST00000446445 471 ntBASIC5.36□□□□□ -1.55
LIG3P49916 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC5.36□□□□□ -1.55
LIG3P49916 AL118520.1-201ENST00000450770 291 ntBASIC5.36□□□□□ -1.55
LIG3P49916 NIPA2P5-201ENST00000452282 464 ntBASIC5.36□□□□□ -1.55
LIG3P49916 AC005008.1-201ENST00000456151 612 ntBASIC5.36□□□□□ -1.55
LIG3P49916 RNU7-180P-201ENST00000459240 63 ntBASIC5.36□□□□□ -1.55
LIG3P49916 AC006967.1-201ENST00000467608 589 ntBASIC5.36□□□□□ -1.55
LIG3P49916 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC5.36□□□□□ -1.55
LIG3P49916 AC135721.1-201ENST00000497954 479 ntBASIC5.36□□□□□ -1.55
LIG3P49916 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC5.36□□□□□ -1.55
LIG3P49916 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC5.36□□□□□ -1.55
LIG3P49916 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC5.36□□□□□ -1.55
LIG3P49916 CARD16-203ENST00000525374 503 ntTSL 3 BASIC5.36□□□□□ -1.55
LIG3P49916 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC5.36□□□□□ -1.55
LIG3P49916 AC069307.1-201ENST00000602820 447 ntBASIC5.36□□□□□ -1.55
LIG3P49916 AP001486.3-201ENST00000615334 372 ntBASIC5.36□□□□□ -1.55
LIG3P49916 uc_338.34-201ENST00000617467 174 ntBASIC5.36□□□□□ -1.55
LIG3P49916 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
LIG3P49916 AC090971.5-201ENST00000621102 293 ntBASIC5.36□□□□□ -1.55
LIG3P49916 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.36□□□□□ -1.55
LIG3P49916 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC5.36□□□□□ -1.55
LIG3P49916 CYP4F35P-202ENST00000636121 390 ntBASIC5.36□□□□□ -1.55
LIG3P49916 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
LIG3P49916 MTND4P27-201ENST00000450813 1354 ntBASIC5.36□□□□□ -1.55
LIG3P49916 PABPC1P7-201ENST00000413177 1513 ntBASIC5.36□□□□□ -1.55
LIG3P49916 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC5.36□□□□□ -1.55
LIG3P49916 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC5.36□□□□□ -1.55
LIG3P49916 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
LIG3P49916 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
LIG3P49916 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
LIG3P49916 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
LIG3P49916 AC008079.2-201ENST00000623543 20396 ntBASIC5.36□□□□□ -1.55
LIG3P49916 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
LIG3P49916 BCLAF1P2-201ENST00000624956 2609 ntBASIC5.36□□□□□ -1.55
LIG3P49916 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC5.36□□□□□ -1.55
LIG3P49916 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
LIG3P49916 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.36□□□□□ -1.55
LIG3P49916 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
LIG3P49916 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
LIG3P49916 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
LIG3P49916 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
LIG3P49916 BDP1P-201ENST00000582658 1990 ntBASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 73.6 ms