Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL6A1P12109 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC5.08□□□□□ -1.6
COL6A1P12109 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL6A1P12109 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL6A1P12109 ADAM5-202ENST00000399789 1942 ntBASIC5.07□□□□□ -1.6
COL6A1P12109 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC5.07□□□□□ -1.6
COL6A1P12109 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
COL6A1P12109 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC5.07□□□□□ -1.6
COL6A1P12109 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL6A1P12109 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
COL6A1P12109 GNG5P1-201ENST00000255500 204 ntBASIC5.07□□□□□ -1.6
COL6A1P12109 MIR383-201ENST00000362257 73 ntBASIC5.07□□□□□ -1.6
COL6A1P12109 RN7SKP44-201ENST00000363602 316 ntBASIC5.07□□□□□ -1.6
COL6A1P12109 Y_RNA.279-201ENST00000364763 95 ntBASIC5.07□□□□□ -1.6
COL6A1P12109 NFIB-202ENST00000380924 840 ntTSL 5 BASIC5.07□□□□□ -1.6
COL6A1P12109 AL603766.1-201ENST00000407763 664 ntBASIC5.07□□□□□ -1.6
COL6A1P12109 RNU2-21P-201ENST00000410368 188 ntBASIC5.07□□□□□ -1.6
COL6A1P12109 RNU6-195P-201ENST00000411352 109 ntBASIC5.07□□□□□ -1.6
COL6A1P12109 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL6A1P12109 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC5.07□□□□□ -1.6
COL6A1P12109 AC092832.1-201ENST00000422934 400 ntBASIC5.07□□□□□ -1.6
COL6A1P12109 TEX41-204ENST00000423031 491 ntTSL 4 BASIC5.07□□□□□ -1.6
COL6A1P12109 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC5.07□□□□□ -1.6
COL6A1P12109 OR2AH1P-201ENST00000425717 928 ntBASIC5.07□□□□□ -1.6
COL6A1P12109 OR4F13P-201ENST00000428478 931 ntBASIC5.07□□□□□ -1.6
COL6A1P12109 FTH1P6-201ENST00000430768 320 ntBASIC5.07□□□□□ -1.6
COL6A1P12109 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC5.07□□□□□ -1.6
COL6A1P12109 MTCO1P42-201ENST00000457379 726 ntBASIC5.07□□□□□ -1.6
COL6A1P12109 AC021660.1-201ENST00000465006 554 ntBASIC5.07□□□□□ -1.6
COL6A1P12109 AC087879.1-201ENST00000474343 374 ntBASIC5.07□□□□□ -1.6
COL6A1P12109 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC5.07□□□□□ -1.6
COL6A1P12109 AP000926.1-201ENST00000479573 241 ntBASIC5.07□□□□□ -1.6
COL6A1P12109 MTND1P3-201ENST00000484956 952 ntBASIC5.07□□□□□ -1.6
COL6A1P12109 Y_RNA.675-201ENST00000516389 149 ntBASIC5.07□□□□□ -1.6
COL6A1P12109 RNU2-46P-201ENST00000517038 113 ntBASIC5.07□□□□□ -1.6
COL6A1P12109 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC5.07□□□□□ -1.6
COL6A1P12109 AC022882.1-201ENST00000532142 501 ntBASIC5.07□□□□□ -1.6
COL6A1P12109 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC5.07□□□□□ -1.6
COL6A1P12109 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
COL6A1P12109 AL157394.1-201ENST00000562983 1224 ntBASIC5.07□□□□□ -1.6
COL6A1P12109 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC5.07□□□□□ -1.6
COL6A1P12109 CKS1BP3-201ENST00000600888 237 ntBASIC5.07□□□□□ -1.6
COL6A1P12109 BNIP3P10-201ENST00000605360 577 ntBASIC5.07□□□□□ -1.6
COL6A1P12109 AC011816.2-201ENST00000607089 556 ntBASIC5.07□□□□□ -1.6
COL6A1P12109 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL6A1P12109 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC5.07□□□□□ -1.6
COL6A1P12109 AC091905.1-201ENST00000624400 311 ntBASIC5.07□□□□□ -1.6
COL6A1P12109 VPS8-228ENST00000628962 207 ntTSL 5 BASIC5.07□□□□□ -1.6
COL6A1P12109 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL6A1P12109 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC5.07□□□□□ -1.6
COL6A1P12109 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
COL6A1P12109 AC073136.1-201ENST00000449426 2884 ntBASIC5.06□□□□□ -1.6
COL6A1P12109 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC5.06□□□□□ -1.6
COL6A1P12109 MFSD8-242ENST00000641690 4199 ntBASIC5.06□□□□□ -1.6
COL6A1P12109 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
COL6A1P12109 AC104623.2-202ENST00000623477 4002 ntBASIC5.06□□□□□ -1.6
COL6A1P12109 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC5.06□□□□□ -1.6
COL6A1P12109 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC5.06□□□□□ -1.6
COL6A1P12109 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
COL6A1P12109 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC5.06□□□□□ -1.6
COL6A1P12109 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL6A1P12109 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL6A1P12109 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC5.06□□□□□ -1.6
COL6A1P12109 SNORA71.3-201ENST00000362582 128 ntBASIC5.06□□□□□ -1.6
COL6A1P12109 RNU4-73P-201ENST00000363164 141 ntBASIC5.06□□□□□ -1.6
COL6A1P12109 RNU6-769P-201ENST00000384407 104 ntBASIC5.06□□□□□ -1.6
COL6A1P12109 HMGB3P20-201ENST00000417997 600 ntBASIC5.06□□□□□ -1.6
COL6A1P12109 USP9YP20-201ENST00000419224 558 ntBASIC5.06□□□□□ -1.6
COL6A1P12109 E2F6P2-201ENST00000420708 748 ntBASIC5.06□□□□□ -1.6
COL6A1P12109 AC008850.1-201ENST00000427546 362 ntBASIC5.06□□□□□ -1.6
COL6A1P12109 AC133104.1-201ENST00000429100 218 ntBASIC5.06□□□□□ -1.6
COL6A1P12109 CKS1BP5-201ENST00000434172 273 ntBASIC5.06□□□□□ -1.6
COL6A1P12109 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC5.06□□□□□ -1.6
COL6A1P12109 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC5.06□□□□□ -1.6
COL6A1P12109 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC5.06□□□□□ -1.6
COL6A1P12109 AC108145.1-201ENST00000503770 153 ntBASIC5.06□□□□□ -1.6
COL6A1P12109 AC006390.1-201ENST00000508068 283 ntBASIC5.06□□□□□ -1.6
COL6A1P12109 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC5.06□□□□□ -1.6
COL6A1P12109 RNU1-45P-201ENST00000517191 141 ntBASIC5.06□□□□□ -1.6
COL6A1P12109 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC5.06□□□□□ -1.6
COL6A1P12109 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC5.06□□□□□ -1.6
COL6A1P12109 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC5.06□□□□□ -1.6
COL6A1P12109 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC5.06□□□□□ -1.6
COL6A1P12109 OR4A12P-201ENST00000530847 918 ntBASIC5.06□□□□□ -1.6
COL6A1P12109 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC5.06□□□□□ -1.6
COL6A1P12109 AC125611.2-201ENST00000551907 647 ntBASIC5.06□□□□□ -1.6
COL6A1P12109 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC5.06□□□□□ -1.6
COL6A1P12109 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC5.06□□□□□ -1.6
COL6A1P12109 AL162413.1-201ENST00000603198 110 ntBASIC5.06□□□□□ -1.6
COL6A1P12109 IGKV2OR2-2-201ENST00000605025 300 ntBASIC5.06□□□□□ -1.6
COL6A1P12109 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC5.06□□□□□ -1.6
COL6A1P12109 U73479.1-201ENST00000618062 168 ntBASIC5.06□□□□□ -1.6
COL6A1P12109 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC5.06□□□□□ -1.6
COL6A1P12109 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC5.06□□□□□ -1.6
COL6A1P12109 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC5.06□□□□□ -1.6
COL6A1P12109 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC5.06□□□□□ -1.6
COL6A1P12109 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC5.06□□□□□ -1.6
COL6A1P12109 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL6A1P12109 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
COL6A1P12109 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms