Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 LIN28B-201ENST00000345080 5505 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
MSH5O43196 LINC01105-204ENST00000444416 2695 ntTSL 2 BASIC9.64□□□□□ -0.87
MSH5O43196 ATM-215ENST00000530958 5718 ntTSL 2 BASIC9.63□□□□□ -0.87
MSH5O43196 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
MSH5O43196 SGMS1-AS1-201ENST00000443374 12400 ntTSL 4 BASIC9.63□□□□□ -0.87
MSH5O43196 FGF10-201ENST00000264664 2193 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
MSH5O43196 MAPK10-296ENST00000641283 2826 ntAPPRIS P2 BASIC9.63□□□□□ -0.87
MSH5O43196 CFAP54-202ENST00000524981 9766 ntAPPRIS P2 TSL 5 BASIC9.63□□□□□ -0.87
MSH5O43196 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC9.63□□□□□ -0.87
MSH5O43196 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
MSH5O43196 OR6P1-201ENST00000334632 954 ntAPPRIS P1 BASIC9.63□□□□□ -0.87
MSH5O43196 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC9.63□□□□□ -0.87
MSH5O43196 AL354868.1-201ENST00000417077 482 ntBASIC9.63□□□□□ -0.87
MSH5O43196 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC9.63□□□□□ -0.87
MSH5O43196 AL589765.3-201ENST00000446084 462 ntBASIC9.63□□□□□ -0.87
MSH5O43196 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC9.63□□□□□ -0.87
MSH5O43196 RN7SL149P-201ENST00000465197 281 ntBASIC9.63□□□□□ -0.87
MSH5O43196 RN7SL518P-201ENST00000491887 280 ntBASIC9.63□□□□□ -0.87
MSH5O43196 AC008957.1-203ENST00000508745 589 ntTSL 3 BASIC9.63□□□□□ -0.87
MSH5O43196 APOBEC3AP1-201ENST00000511396 287 ntBASIC9.63□□□□□ -0.87
MSH5O43196 GMPSP1-201ENST00000514075 579 ntBASIC9.63□□□□□ -0.87
MSH5O43196 RNU6-162P-201ENST00000516228 103 ntBASIC9.63□□□□□ -0.87
MSH5O43196 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC9.63□□□□□ -0.87
MSH5O43196 ZNF90-201ENST00000418063 2310 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
MSH5O43196 IL5RA-209ENST00000446632 2514 ntAPPRIS P4 TSL 5 BASIC9.63□□□□□ -0.87
MSH5O43196 PARP2-201ENST00000250416 1886 ntAPPRIS P3 TSL 1 (best) BASIC9.63□□□□□ -0.87
MSH5O43196 BEST3-202ENST00000330891 3532 ntAPPRIS P1 TSL 5 BASIC9.63□□□□□ -0.87
MSH5O43196 DCDC2-201ENST00000378450 3684 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
MSH5O43196 ATF6-201ENST00000367942 7496 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
MSH5O43196 AC242022.1-201ENST00000638002 1565 ntTSL 5 BASIC9.63□□□□□ -0.87
MSH5O43196 COL6A5-201ENST00000265379 9214 ntAPPRIS P1 TSL 5 BASIC9.63□□□□□ -0.87
MSH5O43196 TP53BP1-202ENST00000382039 6015 ntTSL 5 BASIC9.62□□□□□ -0.87
MSH5O43196 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC9.62□□□□□ -0.87
MSH5O43196 ENSA-201ENST00000271690 2818 ntAPPRIS ALT1 TSL 1 (best) BASIC9.62□□□□□ -0.87
MSH5O43196 AL391361.1-201ENST00000405580 489 ntBASIC9.62□□□□□ -0.87
MSH5O43196 AC126124.2-201ENST00000413542 321 ntBASIC9.62□□□□□ -0.87
MSH5O43196 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC9.62□□□□□ -0.87
MSH5O43196 AL157400.1-201ENST00000428166 368 ntTSL 5 BASIC9.62□□□□□ -0.87
MSH5O43196 AC073900.1-201ENST00000429766 776 ntBASIC9.62□□□□□ -0.87
MSH5O43196 KRTAP3-4P-201ENST00000430780 280 ntBASIC9.62□□□□□ -0.87
MSH5O43196 DBIL5P2-201ENST00000443827 253 ntBASIC9.62□□□□□ -0.87
MSH5O43196 DEFA11P-201ENST00000446470 261 ntBASIC9.62□□□□□ -0.87
MSH5O43196 RPL30P12-201ENST00000474666 353 ntBASIC9.62□□□□□ -0.87
MSH5O43196 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC9.62□□□□□ -0.87
MSH5O43196 AC005921.1-201ENST00000510589 286 ntBASIC9.62□□□□□ -0.87
MSH5O43196 RNU6-197P-201ENST00000516680 100 ntBASIC9.62□□□□□ -0.87
MSH5O43196 AC079089.1-203ENST00000533300 431 ntTSL 5 BASIC9.62□□□□□ -0.87
MSH5O43196 AC006065.4-203ENST00000541065 526 ntTSL 2 BASIC9.62□□□□□ -0.87
MSH5O43196 AL138963.2-201ENST00000605137 226 ntBASIC9.62□□□□□ -0.87
MSH5O43196 LINC01002-204ENST00000631644 473 ntTSL 5 BASIC9.62□□□□□ -0.87
MSH5O43196 ITPR1-201ENST00000302640 10197 ntAPPRIS ALT1 TSL 5 BASIC9.62□□□□□ -0.87
MSH5O43196 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
MSH5O43196 OR10A2-202ENST00000641461 5390 ntAPPRIS P1 BASIC9.62□□□□□ -0.87
MSH5O43196 PPFIA2-202ENST00000407050 3903 ntTSL 2 BASIC9.62□□□□□ -0.87
MSH5O43196 CDH12-201ENST00000382254 4164 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
MSH5O43196 CEP250-202ENST00000397527 15703 ntAPPRIS P1 TSL 5 BASIC9.62□□□□□ -0.87
MSH5O43196 AC016745.2-201ENST00000608834 3443 ntBASIC9.62□□□□□ -0.87
MSH5O43196 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
MSH5O43196 CEACAM6-201ENST00000199764 2700 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
MSH5O43196 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC9.61□□□□□ -0.87
MSH5O43196 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC9.61□□□□□ -0.87
MSH5O43196 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
MSH5O43196 ZNF33A-204ENST00000458705 6084 ntAPPRIS P3 TSL 1 (best) BASIC9.61□□□□□ -0.87
MSH5O43196 AC139426.3-201ENST00000605648 2059 ntBASIC9.61□□□□□ -0.87
MSH5O43196 ZNF600-201ENST00000338230 3829 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
MSH5O43196 Y_RNA.33-201ENST00000362591 102 ntBASIC9.61□□□□□ -0.87
MSH5O43196 RN7SKP104-201ENST00000362605 328 ntBASIC9.61□□□□□ -0.87
MSH5O43196 RNU6-873P-201ENST00000363833 107 ntBASIC9.61□□□□□ -0.87
MSH5O43196 RNU1-130P-201ENST00000363930 160 ntBASIC9.61□□□□□ -0.87
MSH5O43196 Y_RNA.340-201ENST00000365330 92 ntBASIC9.61□□□□□ -0.87
MSH5O43196 MIR187-201ENST00000385062 109 ntBASIC9.61□□□□□ -0.87
MSH5O43196 RN7SKP148-201ENST00000410179 275 ntBASIC9.61□□□□□ -0.87
MSH5O43196 BCRP8-201ENST00000412037 255 ntBASIC9.61□□□□□ -0.87
MSH5O43196 GLRXP3-201ENST00000470810 321 ntBASIC9.61□□□□□ -0.87
MSH5O43196 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC9.61□□□□□ -0.87
MSH5O43196 AC010287.1-201ENST00000566916 357 ntBASIC9.61□□□□□ -0.87
MSH5O43196 FO393422.1-201ENST00000603908 708 ntBASIC9.61□□□□□ -0.87
MSH5O43196 AC129908.1-201ENST00000624553 648 ntBASIC9.61□□□□□ -0.87
MSH5O43196 MIR3674-201ENST00000636576 68 ntBASIC9.61□□□□□ -0.87
MSH5O43196 AL596275.2-208ENST00000641192 594 ntBASIC9.61□□□□□ -0.87
MSH5O43196 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC9.61□□□□□ -0.87
MSH5O43196 TRPS1-212ENST00000640765 9514 ntTSL 2 BASIC9.61□□□□□ -0.87
MSH5O43196 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC9.61□□□□□ -0.87
MSH5O43196 ZNF761-202ENST00000432094 4061 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
MSH5O43196 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
MSH5O43196 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
MSH5O43196 GALNT11-201ENST00000415421 2555 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
MSH5O43196 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
MSH5O43196 OR2T12-202ENST00000641276 5708 ntAPPRIS P1 BASIC9.61□□□□□ -0.87
MSH5O43196 AL080317.3-201ENST00000607434 4315 ntBASIC9.6□□□□□ -0.87
MSH5O43196 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC9.6□□□□□ -0.87
MSH5O43196 HMG20A-202ENST00000381714 4112 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
MSH5O43196 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC9.6□□□□□ -0.87
MSH5O43196 ZNF793-201ENST00000445217 6712 ntAPPRIS P1 TSL 5 BASIC9.6□□□□□ -0.87
MSH5O43196 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC9.6□□□□□ -0.87
MSH5O43196 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC9.6□□□□□ -0.87
MSH5O43196 PAPOLG-201ENST00000238714 4263 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
MSH5O43196 RNU1-72P-201ENST00000362976 153 ntBASIC9.6□□□□□ -0.87
MSH5O43196 TRBV6-6-201ENST00000390371 388 ntAPPRIS P1 BASIC9.6□□□□□ -0.87
MSH5O43196 AC005042.1-201ENST00000393397 800 ntBASIC9.6□□□□□ -0.87
Retrieved 100 of 98,524 protein–RNA pairs in 144.1 ms