Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
LHX3Q9UBR4 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
LHX3Q9UBR4 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
LHX3Q9UBR4 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
LHX3Q9UBR4 NACA3P-201ENST00000359690 648 ntBASIC3.32□□□□□ -1.88
LHX3Q9UBR4 MIR423-201ENST00000362201 94 ntBASIC3.32□□□□□ -1.88
LHX3Q9UBR4 RNU6-413P-201ENST00000384115 107 ntBASIC3.32□□□□□ -1.88
LHX3Q9UBR4 AL450338.1-201ENST00000407987 512 ntBASIC3.32□□□□□ -1.88
LHX3Q9UBR4 RNU6-712P-201ENST00000410558 100 ntBASIC3.32□□□□□ -1.88
LHX3Q9UBR4 RNU2-71P-201ENST00000411395 189 ntBASIC3.32□□□□□ -1.88
LHX3Q9UBR4 RPS3AP37-201ENST00000419176 745 ntBASIC3.32□□□□□ -1.88
LHX3Q9UBR4 HSD52-202ENST00000436225 772 ntTSL 3 BASIC3.32□□□□□ -1.88
LHX3Q9UBR4 RPL23AP74-201ENST00000437246 471 ntBASIC3.32□□□□□ -1.88
LHX3Q9UBR4 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.32□□□□□ -1.88
LHX3Q9UBR4 OR10R1P-201ENST00000441524 1141 ntBASIC3.32□□□□□ -1.88
LHX3Q9UBR4 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.32□□□□□ -1.88
LHX3Q9UBR4 EXTL2P1-201ENST00000446218 416 ntBASIC3.32□□□□□ -1.88
LHX3Q9UBR4 AL589880.1-201ENST00000448271 287 ntBASIC3.32□□□□□ -1.88
LHX3Q9UBR4 RPL39P6-201ENST00000448289 150 ntBASIC3.32□□□□□ -1.88
LHX3Q9UBR4 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.32□□□□□ -1.88
LHX3Q9UBR4 USP9YP34-201ENST00000453983 808 ntBASIC3.32□□□□□ -1.88
LHX3Q9UBR4 snoU109.4-201ENST00000458953 143 ntBASIC3.32□□□□□ -1.88
LHX3Q9UBR4 WDR78-207ENST00000488333 613 ntTSL 3 BASIC3.32□□□□□ -1.88
LHX3Q9UBR4 AC068305.1-201ENST00000497406 726 ntBASIC3.32□□□□□ -1.88
LHX3Q9UBR4 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.32□□□□□ -1.88
LHX3Q9UBR4 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.32□□□□□ -1.88
LHX3Q9UBR4 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.32□□□□□ -1.88
LHX3Q9UBR4 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC3.32□□□□□ -1.88
LHX3Q9UBR4 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.32□□□□□ -1.88
LHX3Q9UBR4 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.32□□□□□ -1.88
LHX3Q9UBR4 HIGD1AP1-201ENST00000550979 275 ntBASIC3.32□□□□□ -1.88
LHX3Q9UBR4 HIGD1AP17-201ENST00000554576 276 ntBASIC3.32□□□□□ -1.88
LHX3Q9UBR4 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC3.32□□□□□ -1.88
LHX3Q9UBR4 AC015688.2-201ENST00000584523 262 ntBASIC3.32□□□□□ -1.88
LHX3Q9UBR4 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC3.32□□□□□ -1.88
LHX3Q9UBR4 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.32□□□□□ -1.88
LHX3Q9UBR4 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.32□□□□□ -1.88
LHX3Q9UBR4 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.32□□□□□ -1.88
LHX3Q9UBR4 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.32□□□□□ -1.88
LHX3Q9UBR4 AC011458.1-201ENST00000604034 617 ntBASIC3.32□□□□□ -1.88
LHX3Q9UBR4 AL160237.3-201ENST00000604114 1013 ntBASIC3.32□□□□□ -1.88
LHX3Q9UBR4 AC055876.5-201ENST00000605667 259 ntBASIC3.32□□□□□ -1.88
LHX3Q9UBR4 AC096577.2-201ENST00000611455 153 ntBASIC3.32□□□□□ -1.88
LHX3Q9UBR4 uc_338.1-201ENST00000612113 180 ntBASIC3.32□□□□□ -1.88
LHX3Q9UBR4 AC092650.2-201ENST00000619984 902 ntBASIC3.32□□□□□ -1.88
LHX3Q9UBR4 AC091925.2-201ENST00000625059 256 ntBASIC3.32□□□□□ -1.88
LHX3Q9UBR4 GMFB-210ENST00000628554 639 ntTSL 4 BASIC3.32□□□□□ -1.88
LHX3Q9UBR4 RPS4XP5-202ENST00000449995 1334 ntBASIC3.32□□□□□ -1.88
LHX3Q9UBR4 MTND5P1-201ENST00000445440 1375 ntBASIC3.32□□□□□ -1.88
LHX3Q9UBR4 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.32□□□□□ -1.88
LHX3Q9UBR4 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
LHX3Q9UBR4 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
LHX3Q9UBR4 AC116096.1-201ENST00000566804 2314 ntBASIC3.31□□□□□ -1.88
LHX3Q9UBR4 HSPA8P1-201ENST00000425843 1833 ntBASIC3.31□□□□□ -1.88
LHX3Q9UBR4 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.31□□□□□ -1.88
LHX3Q9UBR4 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.31□□□□□ -1.88
LHX3Q9UBR4 RNU6-878P-201ENST00000384578 110 ntBASIC3.31□□□□□ -1.88
LHX3Q9UBR4 AL590084.1-201ENST00000407885 387 ntBASIC3.31□□□□□ -1.88
LHX3Q9UBR4 RNU2-15P-201ENST00000410692 191 ntBASIC3.31□□□□□ -1.88
LHX3Q9UBR4 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.31□□□□□ -1.88
LHX3Q9UBR4 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC3.31□□□□□ -1.88
LHX3Q9UBR4 PTP4A1P5-201ENST00000420305 455 ntBASIC3.31□□□□□ -1.88
LHX3Q9UBR4 GLRXP1-201ENST00000423261 334 ntBASIC3.31□□□□□ -1.88
LHX3Q9UBR4 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.31□□□□□ -1.88
LHX3Q9UBR4 MTCO2P23-201ENST00000425216 680 ntBASIC3.31□□□□□ -1.88
LHX3Q9UBR4 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.31□□□□□ -1.88
LHX3Q9UBR4 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC3.31□□□□□ -1.88
LHX3Q9UBR4 USP9YP31-201ENST00000431405 881 ntBASIC3.31□□□□□ -1.88
LHX3Q9UBR4 AC091862.1-201ENST00000438016 1100 ntBASIC3.31□□□□□ -1.88
LHX3Q9UBR4 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC3.31□□□□□ -1.88
LHX3Q9UBR4 EEF1A1P39-201ENST00000440791 250 ntBASIC3.31□□□□□ -1.88
LHX3Q9UBR4 AC007327.1-201ENST00000447461 264 ntBASIC3.31□□□□□ -1.88
LHX3Q9UBR4 SLC31A1P1-201ENST00000451221 567 ntBASIC3.31□□□□□ -1.88
LHX3Q9UBR4 AL445669.2-201ENST00000454425 421 ntBASIC3.31□□□□□ -1.88
LHX3Q9UBR4 BX510359.1-201ENST00000456973 237 ntBASIC3.31□□□□□ -1.88
LHX3Q9UBR4 HMGB1P25-201ENST00000468402 607 ntBASIC3.31□□□□□ -1.88
LHX3Q9UBR4 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
LHX3Q9UBR4 AC011979.1-201ENST00000472300 483 ntBASIC3.31□□□□□ -1.88
LHX3Q9UBR4 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
LHX3Q9UBR4 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.31□□□□□ -1.88
LHX3Q9UBR4 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC3.31□□□□□ -1.88
LHX3Q9UBR4 UBE2V1P12-201ENST00000503954 474 ntBASIC3.31□□□□□ -1.88
LHX3Q9UBR4 AC006390.1-201ENST00000508068 283 ntBASIC3.31□□□□□ -1.88
LHX3Q9UBR4 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.31□□□□□ -1.88
LHX3Q9UBR4 AC010625.1-201ENST00000511296 403 ntBASIC3.31□□□□□ -1.88
LHX3Q9UBR4 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.31□□□□□ -1.88
LHX3Q9UBR4 NDUFB4P9-201ENST00000511646 388 ntBASIC3.31□□□□□ -1.88
LHX3Q9UBR4 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC3.31□□□□□ -1.88
LHX3Q9UBR4 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.31□□□□□ -1.88
LHX3Q9UBR4 SNORA70.14-201ENST00000516205 110 ntBASIC3.31□□□□□ -1.88
LHX3Q9UBR4 RN7SKP60-201ENST00000516985 239 ntBASIC3.31□□□□□ -1.88
LHX3Q9UBR4 SCARNA1-201ENST00000517138 166 ntBASIC3.31□□□□□ -1.88
LHX3Q9UBR4 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.31□□□□□ -1.88
LHX3Q9UBR4 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC3.31□□□□□ -1.88
LHX3Q9UBR4 AC005832.3-201ENST00000537929 631 ntBASIC3.31□□□□□ -1.88
LHX3Q9UBR4 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC3.31□□□□□ -1.88
LHX3Q9UBR4 AC011602.1-201ENST00000546484 331 ntBASIC3.31□□□□□ -1.88
LHX3Q9UBR4 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC3.31□□□□□ -1.88
LHX3Q9UBR4 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC3.31□□□□□ -1.88
LHX3Q9UBR4 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 91.6 ms