Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.69□□□□□ -1.82
USP28Q96RU2 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC3.69□□□□□ -1.82
USP28Q96RU2 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.69□□□□□ -1.82
USP28Q96RU2 AL161449.1-201ENST00000414531 1199 ntBASIC3.69□□□□□ -1.82
USP28Q96RU2 HMGB3P23-201ENST00000414981 585 ntBASIC3.69□□□□□ -1.82
USP28Q96RU2 MTCYBP24-201ENST00000420387 1106 ntBASIC3.69□□□□□ -1.82
USP28Q96RU2 RPL7P44-201ENST00000424827 742 ntBASIC3.69□□□□□ -1.82
USP28Q96RU2 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC3.69□□□□□ -1.82
USP28Q96RU2 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.69□□□□□ -1.82
USP28Q96RU2 RPL7P59-201ENST00000447700 943 ntBASIC3.69□□□□□ -1.82
USP28Q96RU2 RPL23AP15-201ENST00000450202 459 ntBASIC3.69□□□□□ -1.82
USP28Q96RU2 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC3.69□□□□□ -1.82
USP28Q96RU2 RPL7P15-201ENST00000461190 712 ntBASIC3.69□□□□□ -1.82
USP28Q96RU2 RPS27P29-201ENST00000463110 252 ntBASIC3.69□□□□□ -1.82
USP28Q96RU2 AP000893.1-201ENST00000474462 794 ntBASIC3.69□□□□□ -1.82
USP28Q96RU2 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC3.69□□□□□ -1.82
USP28Q96RU2 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC3.69□□□□□ -1.82
USP28Q96RU2 AC010486.2-201ENST00000505572 483 ntBASIC3.69□□□□□ -1.82
USP28Q96RU2 AC021146.8-201ENST00000507455 733 ntBASIC3.69□□□□□ -1.82
USP28Q96RU2 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC3.69□□□□□ -1.82
USP28Q96RU2 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC3.69□□□□□ -1.82
USP28Q96RU2 RNU6-202P-201ENST00000515998 96 ntBASIC3.69□□□□□ -1.82
USP28Q96RU2 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC3.69□□□□□ -1.82
USP28Q96RU2 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.69□□□□□ -1.82
USP28Q96RU2 BNIP3P5-201ENST00000562290 498 ntBASIC3.69□□□□□ -1.82
USP28Q96RU2 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC3.69□□□□□ -1.82
USP28Q96RU2 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC3.69□□□□□ -1.82
USP28Q96RU2 AC022662.1-201ENST00000580252 331 ntBASIC3.69□□□□□ -1.82
USP28Q96RU2 AC008687.2-201ENST00000597865 520 ntBASIC3.69□□□□□ -1.82
USP28Q96RU2 SNRPGP15-201ENST00000600149 222 ntBASIC3.69□□□□□ -1.82
USP28Q96RU2 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC3.69□□□□□ -1.82
USP28Q96RU2 DUXAP3-201ENST00000603616 594 ntBASIC3.69□□□□□ -1.82
USP28Q96RU2 AC021749.1-201ENST00000604322 607 ntBASIC3.69□□□□□ -1.82
USP28Q96RU2 AC090425.2-201ENST00000608818 501 ntBASIC3.69□□□□□ -1.82
USP28Q96RU2 AP000676.3-201ENST00000623299 569 ntBASIC3.69□□□□□ -1.82
USP28Q96RU2 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC3.69□□□□□ -1.82
USP28Q96RU2 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
USP28Q96RU2 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.69□□□□□ -1.82
USP28Q96RU2 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.69□□□□□ -1.82
USP28Q96RU2 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.69□□□□□ -1.82
USP28Q96RU2 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.69□□□□□ -1.82
USP28Q96RU2 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
USP28Q96RU2 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
USP28Q96RU2 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
USP28Q96RU2 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
USP28Q96RU2 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
USP28Q96RU2 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
USP28Q96RU2 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
USP28Q96RU2 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
USP28Q96RU2 FAM133CP-201ENST00000332869 704 ntBASIC3.68□□□□□ -1.82
USP28Q96RU2 U3.6-201ENST00000363622 211 ntBASIC3.68□□□□□ -1.82
USP28Q96RU2 Y_RNA.169-201ENST00000363745 96 ntBASIC3.68□□□□□ -1.82
USP28Q96RU2 RSL24D1P4-201ENST00000400938 484 ntBASIC3.68□□□□□ -1.82
USP28Q96RU2 AC007435.1-201ENST00000421086 415 ntBASIC3.68□□□□□ -1.82
USP28Q96RU2 AC011233.1-201ENST00000422812 283 ntBASIC3.68□□□□□ -1.82
USP28Q96RU2 NIPA2P1-201ENST00000426223 976 ntBASIC3.68□□□□□ -1.82
USP28Q96RU2 Z93242.1-201ENST00000427102 353 ntBASIC3.68□□□□□ -1.82
USP28Q96RU2 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
USP28Q96RU2 B3GNT2P1-201ENST00000434960 952 ntBASIC3.68□□□□□ -1.82
USP28Q96RU2 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC3.68□□□□□ -1.82
USP28Q96RU2 MTND2P22-201ENST00000444325 1033 ntBASIC3.68□□□□□ -1.82
USP28Q96RU2 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC3.68□□□□□ -1.82
USP28Q96RU2 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC3.68□□□□□ -1.82
USP28Q96RU2 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.68□□□□□ -1.82
USP28Q96RU2 RPL21P104-201ENST00000464143 478 ntBASIC3.68□□□□□ -1.82
USP28Q96RU2 RN7SL330P-201ENST00000469709 307 ntBASIC3.68□□□□□ -1.82
USP28Q96RU2 RPS4XP13-201ENST00000483219 789 ntBASIC3.68□□□□□ -1.82
USP28Q96RU2 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC3.68□□□□□ -1.82
USP28Q96RU2 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
USP28Q96RU2 RNU5A-4P-201ENST00000516588 111 ntBASIC3.68□□□□□ -1.82
USP28Q96RU2 RNU6-885P-201ENST00000516607 104 ntBASIC3.68□□□□□ -1.82
USP28Q96RU2 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.68□□□□□ -1.82
USP28Q96RU2 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC3.68□□□□□ -1.82
USP28Q96RU2 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC3.68□□□□□ -1.82
USP28Q96RU2 AL354943.1-201ENST00000572103 781 ntBASIC3.68□□□□□ -1.82
USP28Q96RU2 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC3.68□□□□□ -1.82
USP28Q96RU2 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.68□□□□□ -1.82
USP28Q96RU2 YWHAQP7-201ENST00000603536 658 ntBASIC3.68□□□□□ -1.82
USP28Q96RU2 AC100793.4-201ENST00000613683 429 ntBASIC3.68□□□□□ -1.82
USP28Q96RU2 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
USP28Q96RU2 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
USP28Q96RU2 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.68□□□□□ -1.82
USP28Q96RU2 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
USP28Q96RU2 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.67□□□□□ -1.82
USP28Q96RU2 PABPC1P7-201ENST00000413177 1513 ntBASIC3.67□□□□□ -1.82
USP28Q96RU2 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC3.67□□□□□ -1.82
USP28Q96RU2 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
USP28Q96RU2 RNU6-839P-201ENST00000363347 108 ntBASIC3.67□□□□□ -1.82
USP28Q96RU2 RNU6-335P-201ENST00000364563 113 ntBASIC3.67□□□□□ -1.82
USP28Q96RU2 Y_RNA.465-201ENST00000384293 102 ntBASIC3.67□□□□□ -1.82
USP28Q96RU2 SNORA51.12-201ENST00000384448 134 ntBASIC3.67□□□□□ -1.82
USP28Q96RU2 MIR134-201ENST00000385258 73 ntBASIC3.67□□□□□ -1.82
USP28Q96RU2 RNA5SP80-201ENST00000410475 111 ntBASIC3.67□□□□□ -1.82
USP28Q96RU2 AC069218.2-201ENST00000411665 344 ntBASIC3.67□□□□□ -1.82
USP28Q96RU2 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC3.67□□□□□ -1.82
USP28Q96RU2 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC3.67□□□□□ -1.82
USP28Q96RU2 AC244098.2-201ENST00000422068 99 ntBASIC3.67□□□□□ -1.82
USP28Q96RU2 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC3.67□□□□□ -1.82
USP28Q96RU2 YWHAZP8-201ENST00000436935 731 ntBASIC3.67□□□□□ -1.82
USP28Q96RU2 HMGB1P12-201ENST00000438594 598 ntBASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms