Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 MIR2053-201ENST00000459295 91 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 AC022215.1-201ENST00000481770 362 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 RN7SL570P-201ENST00000484405 292 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 RNA5SP271-201ENST00000516700 88 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 AC021678.3-201ENST00000517893 476 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 CYCSP27-201ENST00000527643 293 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 AC026371.1-201ENST00000551867 419 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 AC022968.1-201ENST00000567372 442 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 AC019322.1-201ENST00000571869 389 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 AC069061.3-201ENST00000582254 823 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 AC008814.1-201ENST00000603797 406 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 CYP2C61P-201ENST00000604072 290 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 AP001836.1-201ENST00000604675 523 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 AL157817.1-201ENST00000614264 790 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 AL096712.1-201ENST00000614561 159 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 AC034102.8-201ENST00000615146 484 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 AL512643.1-201ENST00000635735 524 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 AL669831.3-213ENST00000636676 183 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 AC000095.2-202ENST00000637415 154 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 MTND5P10-201ENST00000603719 1809 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 EFTUD1P2-201ENST00000514817 1603 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 RNA5SP435-201ENST00000364044 108 ntBASIC4.42□□□□□ -1.7
CCDC140Q96MF4 RNU6-335P-201ENST00000364563 113 ntBASIC4.42□□□□□ -1.7
CCDC140Q96MF4 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 RNU6-128P-201ENST00000383976 107 ntBASIC4.42□□□□□ -1.7
CCDC140Q96MF4 MIR578-201ENST00000384828 96 ntBASIC4.42□□□□□ -1.7
CCDC140Q96MF4 RNU4-25P-201ENST00000410569 230 ntBASIC4.42□□□□□ -1.7
CCDC140Q96MF4 HMGN1P20-201ENST00000411849 300 ntBASIC4.42□□□□□ -1.7
CCDC140Q96MF4 AL513331.1-201ENST00000411908 397 ntBASIC4.42□□□□□ -1.7
CCDC140Q96MF4 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 AP006222.1-205ENST00000450734 457 ntBASIC4.42□□□□□ -1.7
CCDC140Q96MF4 Z92846.1-201ENST00000456203 268 ntBASIC4.42□□□□□ -1.7
CCDC140Q96MF4 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 RPS23P6-201ENST00000466136 431 ntBASIC4.42□□□□□ -1.7
CCDC140Q96MF4 AP000926.1-201ENST00000479573 241 ntBASIC4.42□□□□□ -1.7
CCDC140Q96MF4 AC092451.1-201ENST00000480211 153 ntBASIC4.42□□□□□ -1.7
CCDC140Q96MF4 AC110792.1-201ENST00000491826 472 ntBASIC4.42□□□□□ -1.7
CCDC140Q96MF4 AC079140.5-201ENST00000507882 310 ntBASIC4.42□□□□□ -1.7
CCDC140Q96MF4 MTND3P25-201ENST00000509243 135 ntBASIC4.42□□□□□ -1.7
CCDC140Q96MF4 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 RNU6-143P-201ENST00000516942 93 ntBASIC4.42□□□□□ -1.7
CCDC140Q96MF4 RNA5SP471-201ENST00000516971 106 ntBASIC4.42□□□□□ -1.7
CCDC140Q96MF4 RNU1-54P-201ENST00000517181 120 ntBASIC4.42□□□□□ -1.7
CCDC140Q96MF4 IGHVII-44-2-201ENST00000517728 250 ntBASIC4.42□□□□□ -1.7
CCDC140Q96MF4 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 SNRPGP18-201ENST00000553000 214 ntBASIC4.42□□□□□ -1.7
CCDC140Q96MF4 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 AC073539.2-201ENST00000597113 165 ntBASIC4.42□□□□□ -1.7
CCDC140Q96MF4 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 AC090607.5-201ENST00000615692 224 ntBASIC4.42□□□□□ -1.7
CCDC140Q96MF4 PISRT1.1-201ENST00000616930 107 ntBASIC4.42□□□□□ -1.7
CCDC140Q96MF4 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 AP005431.1-201ENST00000618479 319 ntBASIC4.42□□□□□ -1.7
CCDC140Q96MF4 uc_338.22-201ENST00000622722 187 ntBASIC4.42□□□□□ -1.7
CCDC140Q96MF4 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 Z99571.1-201ENST00000636677 394 ntBASIC4.42□□□□□ -1.7
CCDC140Q96MF4 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms