Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CIITAP33076 RNA5SP88-201ENST00000365560 109 ntBASIC4.29□□□□□ -1.72
CIITAP33076 ZNF603P-201ENST00000405613 487 ntBASIC4.29□□□□□ -1.72
CIITAP33076 OFD1P11Y-201ENST00000418213 1177 ntBASIC4.29□□□□□ -1.72
CIITAP33076 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC4.29□□□□□ -1.72
CIITAP33076 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC4.29□□□□□ -1.72
CIITAP33076 OR51AB1P-201ENST00000429046 620 ntBASIC4.29□□□□□ -1.72
CIITAP33076 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC4.29□□□□□ -1.72
CIITAP33076 AL445584.1-201ENST00000431451 330 ntBASIC4.29□□□□□ -1.72
CIITAP33076 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC4.29□□□□□ -1.72
CIITAP33076 AC007389.2-201ENST00000434630 306 ntBASIC4.29□□□□□ -1.72
CIITAP33076 AL512286.1-201ENST00000439244 400 ntBASIC4.29□□□□□ -1.72
CIITAP33076 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC4.29□□□□□ -1.72
CIITAP33076 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC4.29□□□□□ -1.72
CIITAP33076 CDC27P1-201ENST00000445384 715 ntBASIC4.29□□□□□ -1.72
CIITAP33076 EEF1E1P1-201ENST00000446998 430 ntBASIC4.29□□□□□ -1.72
CIITAP33076 AL500522.2-201ENST00000448562 343 ntBASIC4.29□□□□□ -1.72
CIITAP33076 HMGB3P22-202ENST00000451823 572 ntBASIC4.29□□□□□ -1.72
CIITAP33076 USP9YP10-201ENST00000454868 628 ntBASIC4.29□□□□□ -1.72
CIITAP33076 RN7SL542P-201ENST00000467147 294 ntBASIC4.29□□□□□ -1.72
CIITAP33076 AC013828.1-201ENST00000481845 158 ntBASIC4.29□□□□□ -1.72
CIITAP33076 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC4.29□□□□□ -1.72
CIITAP33076 KLRA1P-201ENST00000503499 986 ntBASIC4.29□□□□□ -1.72
CIITAP33076 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC4.29□□□□□ -1.72
CIITAP33076 USP9YP5-201ENST00000511770 630 ntBASIC4.29□□□□□ -1.72
CIITAP33076 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CIITAP33076 MTCYBP43-201ENST00000513621 740 ntBASIC4.29□□□□□ -1.72
CIITAP33076 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC4.29□□□□□ -1.72
CIITAP33076 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC4.29□□□□□ -1.72
CIITAP33076 AC022695.1-201ENST00000522089 237 ntBASIC4.29□□□□□ -1.72
CIITAP33076 MTCYBP20-201ENST00000524239 1129 ntBASIC4.29□□□□□ -1.72
CIITAP33076 AC087276.1-201ENST00000529659 480 ntBASIC4.29□□□□□ -1.72
CIITAP33076 ZDHHC20P3-201ENST00000531576 336 ntBASIC4.29□□□□□ -1.72
CIITAP33076 OR6C73P-201ENST00000546432 358 ntBASIC4.29□□□□□ -1.72
CIITAP33076 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC4.29□□□□□ -1.72
CIITAP33076 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.29□□□□□ -1.72
CIITAP33076 CYCSP2-201ENST00000558168 301 ntBASIC4.29□□□□□ -1.72
CIITAP33076 AC136618.2-201ENST00000575091 400 ntBASIC4.29□□□□□ -1.72
CIITAP33076 MIR3611-201ENST00000584484 83 ntBASIC4.29□□□□□ -1.72
CIITAP33076 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.29□□□□□ -1.72
CIITAP33076 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.29□□□□□ -1.72
CIITAP33076 AC022146.1-201ENST00000595307 847 ntBASIC4.29□□□□□ -1.72
CIITAP33076 DEFB131E-202ENST00000602581 683 ntBASIC4.29□□□□□ -1.72
CIITAP33076 AC025946.2-201ENST00000603398 234 ntBASIC4.29□□□□□ -1.72
CIITAP33076 AC128687.1-201ENST00000605304 619 ntBASIC4.29□□□□□ -1.72
CIITAP33076 AL021997.1-201ENST00000605757 193 ntBASIC4.29□□□□□ -1.72
CIITAP33076 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC4.29□□□□□ -1.72
CIITAP33076 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC4.29□□□□□ -1.72
CIITAP33076 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC4.29□□□□□ -1.72
CIITAP33076 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CIITAP33076 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
CIITAP33076 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC4.29□□□□□ -1.72
CIITAP33076 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CIITAP33076 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
CIITAP33076 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CIITAP33076 PABPC1P7-201ENST00000413177 1513 ntBASIC4.28□□□□□ -1.72
CIITAP33076 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CIITAP33076 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CIITAP33076 ESD-201ENST00000378697 1079 ntTSL 5 BASIC4.28□□□□□ -1.72
CIITAP33076 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
CIITAP33076 EIF5P1-201ENST00000400019 1231 ntBASIC4.28□□□□□ -1.72
CIITAP33076 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
CIITAP33076 Y_RNA.619-201ENST00000410951 90 ntBASIC4.28□□□□□ -1.72
CIITAP33076 SNORA57.3-201ENST00000411095 141 ntBASIC4.28□□□□□ -1.72
CIITAP33076 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
CIITAP33076 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC4.28□□□□□ -1.72
CIITAP33076 AL953862.1-201ENST00000423016 168 ntBASIC4.28□□□□□ -1.72
CIITAP33076 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.28□□□□□ -1.72
CIITAP33076 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC4.28□□□□□ -1.72
CIITAP33076 RNU6-956P-201ENST00000458868 103 ntBASIC4.28□□□□□ -1.72
CIITAP33076 AC116337.2-201ENST00000477662 156 ntBASIC4.28□□□□□ -1.72
CIITAP33076 OR4G11P-201ENST00000492842 939 ntBASIC4.28□□□□□ -1.72
CIITAP33076 AC006499.2-201ENST00000513470 337 ntBASIC4.28□□□□□ -1.72
CIITAP33076 AC104057.1-201ENST00000515547 497 ntBASIC4.28□□□□□ -1.72
CIITAP33076 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC4.28□□□□□ -1.72
CIITAP33076 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC4.28□□□□□ -1.72
CIITAP33076 ARL2BPP5-201ENST00000523141 481 ntBASIC4.28□□□□□ -1.72
CIITAP33076 OR4R3P-201ENST00000525084 838 ntBASIC4.28□□□□□ -1.72
CIITAP33076 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CIITAP33076 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC4.28□□□□□ -1.72
CIITAP33076 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC4.28□□□□□ -1.72
CIITAP33076 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CIITAP33076 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC4.28□□□□□ -1.72
CIITAP33076 AL049634.3-201ENST00000604968 457 ntBASIC4.28□□□□□ -1.72
CIITAP33076 AC087752.4-201ENST00000605911 462 ntBASIC4.28□□□□□ -1.72
CIITAP33076 DLEU2_1.1-201ENST00000612089 120 ntBASIC4.28□□□□□ -1.72
CIITAP33076 DLEU2_1.2-201ENST00000614667 120 ntBASIC4.28□□□□□ -1.72
CIITAP33076 AC079228.1-201ENST00000624774 1049 ntBASIC4.28□□□□□ -1.72
CIITAP33076 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
CIITAP33076 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CIITAP33076 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CIITAP33076 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
CIITAP33076 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.28□□□□□ -1.73
CIITAP33076 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
CIITAP33076 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CIITAP33076 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.27□□□□□ -1.73
CIITAP33076 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.27□□□□□ -1.73
CIITAP33076 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CIITAP33076 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CIITAP33076 SNORA75-201ENST00000384158 137 ntBASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms