Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
COL4A5P29400 AC093311.1-201ENST00000506586 2021 ntBASIC2.62□□□□□ -1.99
COL4A5P29400 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.62□□□□□ -1.99
COL4A5P29400 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC2.62□□□□□ -1.99
COL4A5P29400 SNORA25.6-201ENST00000364121 118 ntBASIC2.62□□□□□ -1.99
COL4A5P29400 MIR142-201ENST00000384835 87 ntBASIC2.62□□□□□ -1.99
COL4A5P29400 SNORA26.9-201ENST00000391322 122 ntBASIC2.62□□□□□ -1.99
COL4A5P29400 NPM1P10-201ENST00000398310 865 ntBASIC2.62□□□□□ -1.99
COL4A5P29400 RNU6-321P-201ENST00000410912 106 ntBASIC2.62□□□□□ -1.99
COL4A5P29400 AP003467.2-201ENST00000520175 319 ntBASIC2.62□□□□□ -1.99
COL4A5P29400 HMGB1P41-201ENST00000520234 440 ntBASIC2.62□□□□□ -1.99
COL4A5P29400 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC2.62□□□□□ -1.99
COL4A5P29400 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC2.62□□□□□ -1.99
COL4A5P29400 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC2.62□□□□□ -1.99
COL4A5P29400 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC2.62□□□□□ -1.99
COL4A5P29400 AC105137.2-201ENST00000569073 466 ntBASIC2.62□□□□□ -1.99
COL4A5P29400 AC090953.1-201ENST00000604305 1092 ntBASIC2.62□□□□□ -1.99
COL4A5P29400 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC2.62□□□□□ -1.99
COL4A5P29400 AC017076.1-201ENST00000607613 578 ntBASIC2.62□□□□□ -1.99
COL4A5P29400 AC019131.2-201ENST00000609071 870 ntBASIC2.62□□□□□ -1.99
COL4A5P29400 AC145207.9-201ENST00000623802 325 ntBASIC2.62□□□□□ -1.99
COL4A5P29400 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
COL4A5P29400 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC2.62□□□□□ -1.99
COL4A5P29400 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.62□□□□□ -1.99
COL4A5P29400 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC2.61□□□□□ -1.99
COL4A5P29400 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC2.61□□□□□ -1.99
COL4A5P29400 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC2.61□□□□□ -1.99
COL4A5P29400 AC108667.1-201ENST00000428618 249 ntBASIC2.61□□□□□ -1.99
COL4A5P29400 AC011753.1-201ENST00000451001 220 ntBASIC2.61□□□□□ -1.99
COL4A5P29400 RNA5SP200-201ENST00000516360 103 ntBASIC2.61□□□□□ -1.99
COL4A5P29400 AF186190.1-201ENST00000517470 480 ntBASIC2.61□□□□□ -1.99
COL4A5P29400 TRAV11-201ENST00000539512 339 ntBASIC2.61□□□□□ -1.99
COL4A5P29400 HMGB3P26-201ENST00000560051 582 ntBASIC2.61□□□□□ -1.99
COL4A5P29400 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
COL4A5P29400 PSMA6P4-201ENST00000603247 718 ntBASIC2.61□□□□□ -1.99
COL4A5P29400 AL592494.3-201ENST00000609485 464 ntBASIC2.61□□□□□ -1.99
COL4A5P29400 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
COL4A5P29400 AL445437.1-201ENST00000623157 3087 ntBASIC2.61□□□□□ -1.99
COL4A5P29400 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC2.6□□□□□ -1.99
COL4A5P29400 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC2.6□□□□□ -1.99
COL4A5P29400 AL445646.1-201ENST00000431784 216 ntBASIC2.6□□□□□ -1.99
COL4A5P29400 IFNWP4-201ENST00000453148 294 ntBASIC2.6□□□□□ -1.99
COL4A5P29400 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC2.6□□□□□ -1.99
COL4A5P29400 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.6□□□□□ -1.99
COL4A5P29400 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC2.6□□□□□ -1.99
COL4A5P29400 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC2.6□□□□□ -1.99
COL4A5P29400 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC2.6□□□□□ -1.99
COL4A5P29400 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.6□□□□□ -1.99
COL4A5P29400 MIR4512-201ENST00000583257 77 ntBASIC2.6□□□□□ -1.99
COL4A5P29400 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC2.6□□□□□ -1.99
COL4A5P29400 AC009318.3-201ENST00000616916 503 ntBASIC2.6□□□□□ -1.99
COL4A5P29400 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.6□□□□□ -1.99
COL4A5P29400 MIR6715B-201ENST00000637172 77 ntBASIC2.6□□□□□ -1.99
COL4A5P29400 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
COL4A5P29400 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
COL4A5P29400 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
COL4A5P29400 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
COL4A5P29400 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC2.6□□□□□ -1.99
COL4A5P29400 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.6□□□□□ -1.99
COL4A5P29400 MIR518E-201ENST00000385252 88 ntBASIC2.6□□□□□ -1.99
COL4A5P29400 SNORD88.1-201ENST00000408684 91 ntBASIC2.6□□□□□ -1.99
COL4A5P29400 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC2.6□□□□□ -1.99
COL4A5P29400 AC099336.2-201ENST00000422457 254 ntBASIC2.6□□□□□ -1.99
COL4A5P29400 AC012498.1-201ENST00000424037 437 ntBASIC2.6□□□□□ -1.99
COL4A5P29400 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.6□□□□□ -1.99
COL4A5P29400 snoU13.18-201ENST00000459483 104 ntBASIC2.6□□□□□ -1.99
COL4A5P29400 RPS27P27-201ENST00000498779 255 ntBASIC2.6□□□□□ -1.99
COL4A5P29400 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
COL4A5P29400 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC2.6□□□□□ -1.99
COL4A5P29400 AC010198.2-201ENST00000550612 259 ntBASIC2.6□□□□□ -1.99
COL4A5P29400 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.6□□□□□ -1.99
COL4A5P29400 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC2.6□□□□□ -1.99
COL4A5P29400 AL645944.1-201ENST00000603857 493 ntBASIC2.6□□□□□ -1.99
COL4A5P29400 YWHAEP7-203ENST00000622054 312 ntBASIC2.6□□□□□ -1.99
COL4A5P29400 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
COL4A5P29400 AL359715.4-201ENST00000606629 1436 ntBASIC2.59□□□□□ -1.99
COL4A5P29400 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.59□□□□□ -1.99
COL4A5P29400 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -1.99
COL4A5P29400 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -1.99
COL4A5P29400 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -1.99
COL4A5P29400 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.59□□□□□ -1.99
COL4A5P29400 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
COL4A5P29400 Y_RNA.116-201ENST00000363292 103 ntBASIC2.59□□□□□ -2
COL4A5P29400 RNU1-51P-201ENST00000365345 176 ntBASIC2.59□□□□□ -2
COL4A5P29400 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC2.59□□□□□ -2
COL4A5P29400 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC2.59□□□□□ -2
COL4A5P29400 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.59□□□□□ -2
COL4A5P29400 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC2.59□□□□□ -2
COL4A5P29400 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC2.59□□□□□ -2
COL4A5P29400 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC2.59□□□□□ -2
COL4A5P29400 MAL2-203ENST00000534619 578 ntTSL 4 BASIC2.59□□□□□ -2
COL4A5P29400 AC093591.3-201ENST00000634516 308 ntBASIC2.59□□□□□ -2
COL4A5P29400 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.59□□□□□ -2
COL4A5P29400 AC110792.3-201ENST00000595906 1614 ntBASIC2.59□□□□□ -2
COL4A5P29400 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC2.59□□□□□ -2
COL4A5P29400 HSP90AA5P-201ENST00000438353 2192 ntBASIC2.58□□□□□ -2
COL4A5P29400 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.58□□□□□ -2
COL4A5P29400 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
COL4A5P29400 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC2.58□□□□□ -2
COL4A5P29400 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 114 ms