Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 C1QTNF7-201ENST00000295297 4516 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
COL9A1P20849 LCP1-202ENST00000398576 3944 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.39
COL9A1P20849 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC6.4□□□□□ -1.39
COL9A1P20849 NXF4-201ENST00000360035 3617 ntTSL 2 BASIC6.39□□□□□ -1.39
COL9A1P20849 ZNF181-204ENST00000492450 5086 ntAPPRIS P3 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL9A1P20849 HYDIN-215ENST00000541601 3058 ntAPPRIS ALT2 TSL 2 BASIC6.39□□□□□ -1.39
COL9A1P20849 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC6.39□□□□□ -1.39
COL9A1P20849 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
COL9A1P20849 MYO1B-203ENST00000392316 4764 ntTSL 5 BASIC6.39□□□□□ -1.39
COL9A1P20849 NBPF12-203ENST00000611443 5594 ntTSL 5 BASIC6.39□□□□□ -1.39
COL9A1P20849 PDE4DIP-204ENST00000369351 4922 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL9A1P20849 IRF6-201ENST00000367021 4306 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL9A1P20849 SNORA21-201ENST00000362423 132 ntBASIC6.39□□□□□ -1.39
COL9A1P20849 SNORA64.1-201ENST00000362600 132 ntBASIC6.39□□□□□ -1.39
COL9A1P20849 RNU6-514P-201ENST00000384208 107 ntBASIC6.39□□□□□ -1.39
COL9A1P20849 Y_RNA.569-201ENST00000384749 103 ntBASIC6.39□□□□□ -1.39
COL9A1P20849 RNU6-651P-201ENST00000411040 105 ntBASIC6.39□□□□□ -1.39
COL9A1P20849 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC6.39□□□□□ -1.39
COL9A1P20849 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC6.39□□□□□ -1.39
COL9A1P20849 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC6.39□□□□□ -1.39
COL9A1P20849 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC6.39□□□□□ -1.39
COL9A1P20849 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC6.39□□□□□ -1.39
COL9A1P20849 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC6.39□□□□□ -1.39
COL9A1P20849 SNORA31.3-201ENST00000516029 96 ntBASIC6.39□□□□□ -1.39
COL9A1P20849 RN7SKP258-201ENST00000517151 304 ntBASIC6.39□□□□□ -1.39
COL9A1P20849 AP005660.1-201ENST00000522972 293 ntBASIC6.39□□□□□ -1.39
COL9A1P20849 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC6.39□□□□□ -1.39
COL9A1P20849 RN7SL52P-201ENST00000584271 284 ntBASIC6.39□□□□□ -1.39
COL9A1P20849 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC6.39□□□□□ -1.39
COL9A1P20849 AC073349.3-201ENST00000617616 186 ntBASIC6.39□□□□□ -1.39
COL9A1P20849 RN7SL722P-201ENST00000617780 284 ntBASIC6.39□□□□□ -1.39
COL9A1P20849 RN7SL565P-201ENST00000618246 284 ntBASIC6.39□□□□□ -1.39
COL9A1P20849 MIR7641-1-201ENST00000627518 61 ntBASIC6.39□□□□□ -1.39
COL9A1P20849 ZNF790-206ENST00000613249 2183 ntAPPRIS P1 TSL 4 BASIC6.39□□□□□ -1.39
COL9A1P20849 SLAMF1-202ENST00000302035 4006 ntAPPRIS P3 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL9A1P20849 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL9A1P20849 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL9A1P20849 CPS1-201ENST00000233072 5821 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL9A1P20849 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC6.39□□□□□ -1.39
COL9A1P20849 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
COL9A1P20849 LEPR-203ENST00000371058 2805 ntTSL 5 BASIC6.39□□□□□ -1.39
COL9A1P20849 MEIS1-209ENST00000488550 5111 ntAPPRIS ALT1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL9A1P20849 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC6.39□□□□□ -1.39
COL9A1P20849 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
COL9A1P20849 TRIM5-203ENST00000396847 3170 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL9A1P20849 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC6.38□□□□□ -1.39
COL9A1P20849 ZNF826P-207ENST00000622273 1910 ntBASIC6.38□□□□□ -1.39
COL9A1P20849 HLF-210ENST00000575345 3589 ntTSL 2 BASIC6.38□□□□□ -1.39
COL9A1P20849 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
COL9A1P20849 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL9A1P20849 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL9A1P20849 CLCA3P-203ENST00000490028 2781 ntBASIC6.38□□□□□ -1.39
COL9A1P20849 SAR1A-206ENST00000431664 2810 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL9A1P20849 AC005332.9-201ENST00000620266 2921 ntBASIC6.38□□□□□ -1.39
COL9A1P20849 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL9A1P20849 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC6.38□□□□□ -1.39
COL9A1P20849 MAPK10-383ENST00000642032 3390 ntBASIC6.38□□□□□ -1.39
COL9A1P20849 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL9A1P20849 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC6.38□□□□□ -1.39
COL9A1P20849 UBE2WP1-201ENST00000362030 340 ntBASIC6.38□□□□□ -1.39
COL9A1P20849 RNA5SP500-201ENST00000364486 119 ntBASIC6.38□□□□□ -1.39
COL9A1P20849 GLULP6-201ENST00000399502 913 ntBASIC6.38□□□□□ -1.39
COL9A1P20849 AL096701.2-201ENST00000416920 238 ntBASIC6.38□□□□□ -1.39
COL9A1P20849 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC6.38□□□□□ -1.39
COL9A1P20849 TRAPPC2P4-201ENST00000421750 331 ntBASIC6.38□□□□□ -1.39
COL9A1P20849 CYCSP52-201ENST00000422857 310 ntBASIC6.38□□□□□ -1.39
COL9A1P20849 AL049745.1-201ENST00000433953 286 ntBASIC6.38□□□□□ -1.39
COL9A1P20849 USP9YP7-201ENST00000436723 430 ntBASIC6.38□□□□□ -1.39
COL9A1P20849 PSMD10P3-201ENST00000437000 448 ntBASIC6.38□□□□□ -1.39
COL9A1P20849 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC6.38□□□□□ -1.39
COL9A1P20849 USP9YP32-201ENST00000452432 430 ntBASIC6.38□□□□□ -1.39
COL9A1P20849 SRI-210ENST00000490437 570 ntTSL 2 BASIC6.38□□□□□ -1.39
COL9A1P20849 RPL30P11-201ENST00000495304 339 ntBASIC6.38□□□□□ -1.39
COL9A1P20849 RNU5F-8P-201ENST00000515941 111 ntBASIC6.38□□□□□ -1.39
COL9A1P20849 RNU6-914P-201ENST00000516749 109 ntBASIC6.38□□□□□ -1.39
COL9A1P20849 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC6.38□□□□□ -1.39
COL9A1P20849 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC6.38□□□□□ -1.39
COL9A1P20849 RPL23AP78-201ENST00000599928 470 ntBASIC6.38□□□□□ -1.39
COL9A1P20849 AC009314.1-201ENST00000603871 304 ntBASIC6.38□□□□□ -1.39
COL9A1P20849 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC6.38□□□□□ -1.39
COL9A1P20849 RMST_4.1-201ENST00000616886 107 ntBASIC6.38□□□□□ -1.39
COL9A1P20849 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC6.38□□□□□ -1.39
COL9A1P20849 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL9A1P20849 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC6.38□□□□□ -1.39
COL9A1P20849 AC005225.5-201ENST00000623547 2225 ntBASIC6.38□□□□□ -1.39
COL9A1P20849 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC6.38□□□□□ -1.39
COL9A1P20849 RASGEF1B-214ENST00000638048 2386 ntTSL 5 BASIC6.38□□□□□ -1.39
COL9A1P20849 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC6.38□□□□□ -1.39
COL9A1P20849 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
COL9A1P20849 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL9A1P20849 AC127070.3-201ENST00000503695 3263 ntBASIC6.38□□□□□ -1.39
COL9A1P20849 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC6.38□□□□□ -1.39
COL9A1P20849 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL9A1P20849 TSC1-203ENST00000440111 8463 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL9A1P20849 NOS1-206ENST00000618760 12283 ntTSL 5 BASIC6.37□□□□□ -1.39
COL9A1P20849 IPO5-222ENST00000490680 3419 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL9A1P20849 AL161901.1-201ENST00000624954 3425 ntBASIC6.37□□□□□ -1.39
COL9A1P20849 ARHGAP20-205ENST00000529591 2623 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL9A1P20849 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC6.37□□□□□ -1.39
COL9A1P20849 HSD17B13-202ENST00000328546 2397 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms