Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 SNRPEP2-201ENST00000397592 279 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 RPL21P65-201ENST00000406094 466 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
LMX1BO60663 RNU2-28P-201ENST00000410457 189 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 CYCSP19-201ENST00000411715 316 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 Z97055.1-201ENST00000419730 712 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.56□□□□□ -1.84
LMX1BO60663 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
LMX1BO60663 COX6B1P7-201ENST00000430845 235 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 AC011742.1-201ENST00000431448 434 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC3.56□□□□□ -1.84
LMX1BO60663 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC3.56□□□□□ -1.84
LMX1BO60663 RPL37P21-201ENST00000435890 276 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 AC092427.1-201ENST00000439177 601 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 PGBD4P3-201ENST00000440731 581 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 AL831737.1-201ENST00000441288 271 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 AL358232.1-201ENST00000448030 501 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 RPL39P6-201ENST00000448289 150 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 PAXBP1P1-201ENST00000449315 447 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 AC243772.1-201ENST00000451620 410 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 snoU13.22-201ENST00000459428 104 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 RPL9P6-201ENST00000492764 598 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 AL358832.1-201ENST00000497800 389 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 AC146944.2-203ENST00000502493 354 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
LMX1BO60663 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
LMX1BO60663 AL592156.1-201ENST00000508758 304 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 NPM1P41-201ENST00000512920 831 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 AC139495.1-202ENST00000513164 354 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 AC108064.1-201ENST00000513791 460 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 RNU6-488P-201ENST00000515918 99 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 RNU6-150P-201ENST00000516237 95 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 RNU7-143P-201ENST00000516781 65 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 RNA5SP143-201ENST00000516936 115 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 PAICSP4-201ENST00000517543 1253 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC3.56□□□□□ -1.84
LMX1BO60663 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC3.56□□□□□ -1.84
LMX1BO60663 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC3.56□□□□□ -1.84
LMX1BO60663 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.56□□□□□ -1.84
LMX1BO60663 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC3.56□□□□□ -1.84
LMX1BO60663 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.56□□□□□ -1.84
LMX1BO60663 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.56□□□□□ -1.84
LMX1BO60663 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC3.56□□□□□ -1.84
LMX1BO60663 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.56□□□□□ -1.84
LMX1BO60663 LARP7P2-201ENST00000575306 125 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC3.56□□□□□ -1.84
LMX1BO60663 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC3.56□□□□□ -1.84
LMX1BO60663 RN7SL600P-201ENST00000581811 299 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 MIR4307-201ENST00000582802 84 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC3.56□□□□□ -1.84
LMX1BO60663 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC3.56□□□□□ -1.84
LMX1BO60663 FAM27D1-201ENST00000612308 341 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 U4.5-201ENST00000617137 123 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 MIR6075-201ENST00000620782 95 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC3.56□□□□□ -1.84
LMX1BO60663 PACRG-211ENST00000621363 360 ntTSL 5 BASIC3.56□□□□□ -1.84
LMX1BO60663 ALG13-230ENST00000623189 458 ntTSL 3 BASIC3.56□□□□□ -1.84
LMX1BO60663 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC3.56□□□□□ -1.84
LMX1BO60663 AC099654.13-201ENST00000639774 207 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC3.56□□□□□ -1.84
LMX1BO60663 OR5H6-203ENST00000642105 978 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
LMX1BO60663 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
LMX1BO60663 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
LMX1BO60663 AC117529.2-201ENST00000512159 2068 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
LMX1BO60663 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC3.56□□□□□ -1.84
LMX1BO60663 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
LMX1BO60663 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.56□□□□□ -1.84
LMX1BO60663 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
LMX1BO60663 ERCC6-202ENST00000374127 1782 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 AL356489.2-201ENST00000566968 3528 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
LMX1BO60663 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
LMX1BO60663 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
LMX1BO60663 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
LMX1BO60663 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.55□□□□□ -1.84
LMX1BO60663 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
LMX1BO60663 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC3.55□□□□□ -1.84
LMX1BO60663 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
LMX1BO60663 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC3.55□□□□□ -1.84
LMX1BO60663 AC009313.2-201ENST00000417893 1941 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 RNA5SP130-201ENST00000364431 114 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 RNU6-867P-201ENST00000364956 107 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 RNU6-444P-201ENST00000383988 108 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 RNU6-921P-201ENST00000384361 107 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 MIR92A2-201ENST00000385299 75 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
LMX1BO60663 RPL17P50-201ENST00000396131 546 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 AL121972.1-201ENST00000402023 252 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 RNU6ATAC-201ENST00000408749 126 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 PRELID3BP11-201ENST00000414230 479 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 AIMP1P1-201ENST00000418670 937 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 AC083875.1-201ENST00000419509 405 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC3.55□□□□□ -1.84
LMX1BO60663 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC3.55□□□□□ -1.84
LMX1BO60663 AL358472.1-201ENST00000431295 329 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 NEK4P1-201ENST00000433383 879 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 AC007389.2-201ENST00000434630 306 ntBASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms