Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AL138693.1-201ENST00000622219 129 ntBASIC6.42□□□□□ -1.38
VPS9D1Q9Y2B5 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC6.42□□□□□ -1.38
VPS9D1Q9Y2B5 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC6.42□□□□□ -1.38
VPS9D1Q9Y2B5 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
VPS9D1Q9Y2B5 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
VPS9D1Q9Y2B5 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
VPS9D1Q9Y2B5 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC6.42□□□□□ -1.38
VPS9D1Q9Y2B5 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
VPS9D1Q9Y2B5 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC6.42□□□□□ -1.38
VPS9D1Q9Y2B5 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
VPS9D1Q9Y2B5 TMC1-201ENST00000297784 3201 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
VPS9D1Q9Y2B5 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
VPS9D1Q9Y2B5 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
VPS9D1Q9Y2B5 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
VPS9D1Q9Y2B5 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
VPS9D1Q9Y2B5 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 OLMALINC-203ENST00000641087 3779 ntBASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 RNA5SP478-201ENST00000364657 115 ntBASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 SNORA70H-201ENST00000383910 135 ntBASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 SNORA70J-201ENST00000384182 135 ntBASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 AC233728.1-201ENST00000418049 218 ntTSL 5 BASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 AL358453.1-201ENST00000422522 250 ntBASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 AC093151.2-201ENST00000429109 394 ntTSL 3 BASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 AL645939.3-201ENST00000435408 225 ntBASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 COL11A2P1-205ENST00000441798 676 ntBASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 PPIAP32-201ENST00000449940 472 ntBASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 AL445991.1-201ENST00000450381 475 ntBASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 YRDCP3-201ENST00000456507 480 ntBASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 RN7SL655P-201ENST00000486087 298 ntBASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 RNA5SP400-201ENST00000517155 111 ntBASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 LECT2-205ENST00000522943 574 ntTSL 3 BASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 MIR5692C2-201ENST00000577959 77 ntBASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 LRRC37A5P-203ENST00000580181 585 ntBASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 AC011516.1-201ENST00000599129 180 ntTSL 3 BASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 MIR8076-201ENST00000611401 83 ntBASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 TUG1_2.1-201ENST00000614234 87 ntBASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 Xist_exon4.1-201ENST00000615964 126 ntBASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 MIR6813-201ENST00000621638 56 ntBASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC6.41□□□□□ -1.38
VPS9D1Q9Y2B5 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 Y_RNA.23-201ENST00000362496 106 ntBASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 SNORD16-201ENST00000362803 99 ntBASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 RN7SKP124-201ENST00000364730 341 ntBASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 RN7SKP269-201ENST00000365545 319 ntBASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 Y_RNA.405-201ENST00000383979 100 ntBASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 Y_RNA.451-201ENST00000384200 100 ntBASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 Y_RNA.524-201ENST00000384564 100 ntBASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 Y_RNA.561-201ENST00000384694 100 ntBASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 RNU4-30P-201ENST00000410245 143 ntBASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 RNA5SP155-201ENST00000411154 129 ntBASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 AC007568.1-201ENST00000422912 471 ntBASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 RPL31P11-202ENST00000454082 372 ntBASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 U8.22-201ENST00000459141 133 ntBASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 AC009567.2-201ENST00000502989 349 ntBASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 MRPS5P3-201ENST00000515577 166 ntBASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 RNU4ATAC10P-201ENST00000516967 122 ntBASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 AC139365.2-201ENST00000517972 253 ntBASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC6.4□□□□□ -1.38
VPS9D1Q9Y2B5 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms