Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 MTCYBP41-201ENST00000528913 1123 ntBASIC4□□□□□ -1.77
LIMA1Q9UHB6 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC4□□□□□ -1.77
LIMA1Q9UHB6 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC4□□□□□ -1.77
LIMA1Q9UHB6 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4□□□□□ -1.77
LIMA1Q9UHB6 OR6C7P-201ENST00000547875 934 ntBASIC4□□□□□ -1.77
LIMA1Q9UHB6 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC4□□□□□ -1.77
LIMA1Q9UHB6 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC4□□□□□ -1.77
LIMA1Q9UHB6 MIR4425-201ENST00000580572 84 ntBASIC4□□□□□ -1.77
LIMA1Q9UHB6 VN1R79P-201ENST00000593540 513 ntBASIC4□□□□□ -1.77
LIMA1Q9UHB6 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC4□□□□□ -1.77
LIMA1Q9UHB6 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC4□□□□□ -1.77
LIMA1Q9UHB6 AL606490.9-201ENST00000603331 271 ntBASIC4□□□□□ -1.77
LIMA1Q9UHB6 AC068313.1-201ENST00000604028 1008 ntBASIC4□□□□□ -1.77
LIMA1Q9UHB6 AC018714.1-201ENST00000605028 208 ntBASIC4□□□□□ -1.77
LIMA1Q9UHB6 AC128687.1-201ENST00000605304 619 ntBASIC4□□□□□ -1.77
LIMA1Q9UHB6 AC018638.7-201ENST00000605836 1114 ntBASIC4□□□□□ -1.77
LIMA1Q9UHB6 RNU6-88P-201ENST00000606801 100 ntBASIC4□□□□□ -1.77
LIMA1Q9UHB6 AC011816.2-201ENST00000607089 556 ntBASIC4□□□□□ -1.77
LIMA1Q9UHB6 AC024560.3-201ENST00000608482 349 ntBASIC4□□□□□ -1.77
LIMA1Q9UHB6 AL360219.1-201ENST00000610230 366 ntBASIC4□□□□□ -1.77
LIMA1Q9UHB6 RMST_8.1-201ENST00000610287 165 ntBASIC4□□□□□ -1.77
LIMA1Q9UHB6 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC4□□□□□ -1.77
LIMA1Q9UHB6 MIR6830-201ENST00000636015 70 ntBASIC4□□□□□ -1.77
LIMA1Q9UHB6 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC4□□□□□ -1.77
LIMA1Q9UHB6 AL157700.1-201ENST00000561973 1432 ntBASIC4□□□□□ -1.77
LIMA1Q9UHB6 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4□□□□□ -1.77
LIMA1Q9UHB6 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4□□□□□ -1.77
LIMA1Q9UHB6 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4□□□□□ -1.77
LIMA1Q9UHB6 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4□□□□□ -1.77
LIMA1Q9UHB6 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 AL049780.3-201ENST00000624612 1583 ntBASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 XIAPP3-201ENST00000312918 795 ntBASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 AC007685.1-201ENST00000329806 452 ntBASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 RPL21P132-201ENST00000331267 462 ntBASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 RPL32P3-201ENST00000359025 275 ntBASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 RNU6-28P-201ENST00000362378 107 ntBASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 RNA5SP235-201ENST00000365411 114 ntBASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 RNU6-629P-201ENST00000384061 103 ntBASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 RNU6-712P-201ENST00000410558 100 ntBASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 TOMM22P1-201ENST00000418578 312 ntBASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 RPL21P89-201ENST00000444021 467 ntBASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 AC002381.1-201ENST00000447049 280 ntBASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 NPM1P49-201ENST00000448027 714 ntBASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 AC009220.1-201ENST00000451614 275 ntBASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 COX7A2P2-201ENST00000505291 250 ntBASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 ARL2BPP6-201ENST00000512757 439 ntBASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 MRPS33P3-201ENST00000513456 322 ntBASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 OR7K1P-201ENST00000546439 926 ntBASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 CYCSP30-201ENST00000546447 172 ntBASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 CBX3P5-201ENST00000552017 521 ntBASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 AC008015.1-201ENST00000555505 465 ntBASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 MIR4644-201ENST00000579929 84 ntBASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 AP000811.1-201ENST00000603803 651 ntBASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 AL596245.1-201ENST00000618994 362 ntBASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 MIR6758-201ENST00000620653 63 ntBASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 PACRG-211ENST00000621363 360 ntTSL 5 BASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 AC007656.2-201ENST00000624902 4547 ntBASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.99□□□□□ -1.77
LIMA1Q9UHB6 AC068647.1-201ENST00000489539 2265 ntBASIC3.98□□□□□ -1.77
LIMA1Q9UHB6 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
LIMA1Q9UHB6 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
LIMA1Q9UHB6 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.98□□□□□ -1.77
LIMA1Q9UHB6 Y_RNA.18-201ENST00000362461 102 ntBASIC3.98□□□□□ -1.77
LIMA1Q9UHB6 RNA5SP167-201ENST00000365461 116 ntBASIC3.98□□□□□ -1.77
LIMA1Q9UHB6 SNORA62-201ENST00000365493 153 ntBASIC3.98□□□□□ -1.77
LIMA1Q9UHB6 MIR184-201ENST00000384962 84 ntBASIC3.98□□□□□ -1.77
LIMA1Q9UHB6 MIR141-201ENST00000384975 95 ntBASIC3.98□□□□□ -1.77
LIMA1Q9UHB6 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
LIMA1Q9UHB6 AL049545.1-201ENST00000401856 572 ntBASIC3.98□□□□□ -1.77
LIMA1Q9UHB6 AL138880.1-201ENST00000405824 642 ntBASIC3.98□□□□□ -1.77
LIMA1Q9UHB6 AL356131.1-201ENST00000405826 414 ntBASIC3.98□□□□□ -1.77
LIMA1Q9UHB6 U3.39-201ENST00000408569 239 ntBASIC3.98□□□□□ -1.77
LIMA1Q9UHB6 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
LIMA1Q9UHB6 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
LIMA1Q9UHB6 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.98□□□□□ -1.77
LIMA1Q9UHB6 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC3.98□□□□□ -1.77
LIMA1Q9UHB6 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
LIMA1Q9UHB6 AL139247.1-201ENST00000422768 325 ntBASIC3.98□□□□□ -1.77
LIMA1Q9UHB6 AL591419.1-201ENST00000427423 339 ntBASIC3.98□□□□□ -1.77
LIMA1Q9UHB6 OR4C10P-201ENST00000434991 931 ntBASIC3.98□□□□□ -1.77
LIMA1Q9UHB6 MTCYBP45-201ENST00000435243 565 ntBASIC3.98□□□□□ -1.77
LIMA1Q9UHB6 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.98□□□□□ -1.77
LIMA1Q9UHB6 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.98□□□□□ -1.77
LIMA1Q9UHB6 AL117351.1-201ENST00000438864 766 ntBASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 131.2 ms