Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 C1GALT1P1-201ENST00000548895 1089 ntBASIC2.09□□□□□ -2.07
VPS13AQ96RL7 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC2.09□□□□□ -2.07
VPS13AQ96RL7 AC126118.1-201ENST00000607744 628 ntBASIC2.09□□□□□ -2.07
VPS13AQ96RL7 LINC00216-201ENST00000623548 1126 ntBASIC2.09□□□□□ -2.07
VPS13AQ96RL7 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC2.09□□□□□ -2.07
VPS13AQ96RL7 U8.10-201ENST00000384260 133 ntBASIC2.09□□□□□ -2.08
VPS13AQ96RL7 RPS15AP12-201ENST00000419498 388 ntBASIC2.09□□□□□ -2.08
VPS13AQ96RL7 RPS27P29-201ENST00000463110 252 ntBASIC2.09□□□□□ -2.08
VPS13AQ96RL7 AC092185.1-201ENST00000491371 97 ntBASIC2.09□□□□□ -2.08
VPS13AQ96RL7 AC091515.1-201ENST00000548110 679 ntBASIC2.09□□□□□ -2.08
VPS13AQ96RL7 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC2.09□□□□□ -2.08
VPS13AQ96RL7 BMS1P7-201ENST00000602440 1052 ntBASIC2.09□□□□□ -2.08
VPS13AQ96RL7 FRG1DP-201ENST00000635586 771 ntBASIC2.09□□□□□ -2.08
VPS13AQ96RL7 AC093909.5-201ENST00000621839 1799 ntBASIC2.09□□□□□ -2.08
VPS13AQ96RL7 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC2.08□□□□□ -2.08
VPS13AQ96RL7 SDCBPP3-201ENST00000419629 891 ntBASIC2.08□□□□□ -2.08
VPS13AQ96RL7 AC245517.2-201ENST00000442890 346 ntBASIC2.08□□□□□ -2.08
VPS13AQ96RL7 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC2.08□□□□□ -2.08
VPS13AQ96RL7 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC2.08□□□□□ -2.08
VPS13AQ96RL7 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.08□□□□□ -2.08
VPS13AQ96RL7 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.08□□□□□ -2.08
VPS13AQ96RL7 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
VPS13AQ96RL7 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC2.08□□□□□ -2.08
VPS13AQ96RL7 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
VPS13AQ96RL7 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
VPS13AQ96RL7 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC2.08□□□□□ -2.08
VPS13AQ96RL7 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.08□□□□□ -2.08
VPS13AQ96RL7 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC2.08□□□□□ -2.08
VPS13AQ96RL7 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC2.08□□□□□ -2.08
VPS13AQ96RL7 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC2.08□□□□□ -2.08
VPS13AQ96RL7 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC2.08□□□□□ -2.08
VPS13AQ96RL7 AL139811.1-201ENST00000424779 2299 ntBASIC2.08□□□□□ -2.08
VPS13AQ96RL7 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC2.08□□□□□ -2.08
VPS13AQ96RL7 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
VPS13AQ96RL7 MIR21-201ENST00000362134 72 ntBASIC2.08□□□□□ -2.08
VPS13AQ96RL7 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC2.08□□□□□ -2.08
VPS13AQ96RL7 LTV1P1-201ENST00000510683 1237 ntBASIC2.08□□□□□ -2.08
VPS13AQ96RL7 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.08□□□□□ -2.08
VPS13AQ96RL7 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC2.08□□□□□ -2.08
VPS13AQ96RL7 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.08□□□□□ -2.08
VPS13AQ96RL7 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC2.08□□□□□ -2.08
VPS13AQ96RL7 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC2.08□□□□□ -2.08
VPS13AQ96RL7 Z99129.2-201ENST00000619967 314 ntBASIC2.08□□□□□ -2.08
VPS13AQ96RL7 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.08□□□□□ -2.08
VPS13AQ96RL7 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
VPS13AQ96RL7 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.08□□□□□ -2.08
VPS13AQ96RL7 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.07□□□□□ -2.08
VPS13AQ96RL7 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC2.07□□□□□ -2.08
VPS13AQ96RL7 SNORD13-201ENST00000459299 104 ntBASIC2.07□□□□□ -2.08
VPS13AQ96RL7 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.07□□□□□ -2.08
VPS13AQ96RL7 AC010546.1-201ENST00000569391 485 ntBASIC2.07□□□□□ -2.08
VPS13AQ96RL7 AP005901.5-201ENST00000545779 1796 ntBASIC2.07□□□□□ -2.08
VPS13AQ96RL7 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.07□□□□□ -2.08
VPS13AQ96RL7 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC2.07□□□□□ -2.08
VPS13AQ96RL7 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
VPS13AQ96RL7 SNORD114-22-201ENST00000365423 72 ntBASIC2.07□□□□□ -2.08
VPS13AQ96RL7 RNA5SP182-201ENST00000516064 82 ntBASIC2.07□□□□□ -2.08
VPS13AQ96RL7 BX248123.2-201ENST00000606318 124 ntBASIC2.07□□□□□ -2.08
VPS13AQ96RL7 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.06□□□□□ -2.08
VPS13AQ96RL7 IGLV3-17-201ENST00000519099 244 ntBASIC2.06□□□□□ -2.08
VPS13AQ96RL7 MIR4255-201ENST00000579351 72 ntBASIC2.06□□□□□ -2.08
VPS13AQ96RL7 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.06□□□□□ -2.08
VPS13AQ96RL7 AC093591.3-201ENST00000634516 308 ntBASIC2.06□□□□□ -2.08
VPS13AQ96RL7 MIR7153-201ENST00000637758 57 ntBASIC2.06□□□□□ -2.08
VPS13AQ96RL7 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC2.06□□□□□ -2.08
VPS13AQ96RL7 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
VPS13AQ96RL7 RN7SKP226-201ENST00000364912 300 ntBASIC2.06□□□□□ -2.08
VPS13AQ96RL7 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2.06□□□□□ -2.08
VPS13AQ96RL7 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC2.06□□□□□ -2.08
VPS13AQ96RL7 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC2.06□□□□□ -2.08
VPS13AQ96RL7 RN7SKP60-201ENST00000516985 239 ntBASIC2.06□□□□□ -2.08
VPS13AQ96RL7 MIR3683-201ENST00000580847 82 ntBASIC2.06□□□□□ -2.08
VPS13AQ96RL7 AL391813.2-201ENST00000609113 322 ntBASIC2.06□□□□□ -2.08
VPS13AQ96RL7 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC2.06□□□□□ -2.08
VPS13AQ96RL7 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
VPS13AQ96RL7 AC009487.4-201ENST00000624969 3585 ntBASIC2.06□□□□□ -2.08
VPS13AQ96RL7 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC2.06□□□□□ -2.08
VPS13AQ96RL7 RNU6-316P-201ENST00000391027 107 ntBASIC2.06□□□□□ -2.08
VPS13AQ96RL7 AC009238.1-201ENST00000442165 424 ntBASIC2.06□□□□□ -2.08
VPS13AQ96RL7 AC009237.6-201ENST00000446969 424 ntBASIC2.06□□□□□ -2.08
VPS13AQ96RL7 RPL23AP63-201ENST00000498752 471 ntBASIC2.06□□□□□ -2.08
VPS13AQ96RL7 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC2.06□□□□□ -2.08
VPS13AQ96RL7 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC2.06□□□□□ -2.08
VPS13AQ96RL7 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.05□□□□□ -2.08
VPS13AQ96RL7 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
VPS13AQ96RL7 AP000275.1-201ENST00000411943 390 ntBASIC2.05□□□□□ -2.08
VPS13AQ96RL7 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC2.05□□□□□ -2.08
VPS13AQ96RL7 MLLT10P2-201ENST00000506434 249 ntBASIC2.05□□□□□ -2.08
VPS13AQ96RL7 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.05□□□□□ -2.08
VPS13AQ96RL7 AC002984.1-201ENST00000591692 448 ntBASIC2.05□□□□□ -2.08
VPS13AQ96RL7 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC2.05□□□□□ -2.08
VPS13AQ96RL7 RMST_2.1-201ENST00000617263 136 ntBASIC2.05□□□□□ -2.08
VPS13AQ96RL7 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
VPS13AQ96RL7 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC2.05□□□□□ -2.08
VPS13AQ96RL7 AC026241.1-201ENST00000517873 2142 ntBASIC2.05□□□□□ -2.08
VPS13AQ96RL7 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.05□□□□□ -2.08
VPS13AQ96RL7 RNA5SP129-201ENST00000410276 118 ntBASIC2.05□□□□□ -2.08
VPS13AQ96RL7 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC2.05□□□□□ -2.08
VPS13AQ96RL7 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC2.05□□□□□ -2.08
VPS13AQ96RL7 AC003989.2-201ENST00000440224 169 ntBASIC2.05□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms