Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 CCDC58P3-201ENST00000590792 430 ntBASIC3.75□□□□□ -1.81
CCDC43Q96MW1 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.75□□□□□ -1.81
CCDC43Q96MW1 AL110115.1-201ENST00000614396 364 ntBASIC3.75□□□□□ -1.81
CCDC43Q96MW1 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC43Q96MW1 MTND5P1-201ENST00000445440 1375 ntBASIC3.75□□□□□ -1.81
CCDC43Q96MW1 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC43Q96MW1 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC43Q96MW1 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.74□□□□□ -1.81
CCDC43Q96MW1 AC091152.2-201ENST00000591628 2569 ntBASIC3.74□□□□□ -1.81
CCDC43Q96MW1 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC43Q96MW1 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC43Q96MW1 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
CCDC43Q96MW1 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.74□□□□□ -1.81
CCDC43Q96MW1 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
CCDC43Q96MW1 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
CCDC43Q96MW1 MIR591-201ENST00000385290 95 ntBASIC3.74□□□□□ -1.81
CCDC43Q96MW1 AL591034.1-201ENST00000407447 340 ntBASIC3.74□□□□□ -1.81
CCDC43Q96MW1 RNU4-65P-201ENST00000410473 140 ntBASIC3.74□□□□□ -1.81
CCDC43Q96MW1 RNU2-15P-201ENST00000410692 191 ntBASIC3.74□□□□□ -1.81
CCDC43Q96MW1 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC43Q96MW1 AL356968.1-201ENST00000416622 474 ntBASIC3.74□□□□□ -1.81
CCDC43Q96MW1 AC099677.1-201ENST00000420575 175 ntBASIC3.74□□□□□ -1.81
CCDC43Q96MW1 TRBV26OR9-2-201ENST00000432077 293 ntBASIC3.74□□□□□ -1.81
CCDC43Q96MW1 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.74□□□□□ -1.81
CCDC43Q96MW1 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.74□□□□□ -1.81
CCDC43Q96MW1 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC43Q96MW1 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC43Q96MW1 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.74□□□□□ -1.81
CCDC43Q96MW1 AC112492.1-201ENST00000449607 712 ntBASIC3.74□□□□□ -1.81
CCDC43Q96MW1 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.74□□□□□ -1.81
CCDC43Q96MW1 AC079776.3-201ENST00000450665 370 ntBASIC3.74□□□□□ -1.81
CCDC43Q96MW1 RNU7-170P-201ENST00000459303 61 ntBASIC3.74□□□□□ -1.81
CCDC43Q96MW1 AC008155.2-201ENST00000464337 397 ntBASIC3.74□□□□□ -1.81
CCDC43Q96MW1 AC017015.1-201ENST00000477387 286 ntBASIC3.74□□□□□ -1.81
CCDC43Q96MW1 RPL7P38-201ENST00000488396 739 ntBASIC3.74□□□□□ -1.81
CCDC43Q96MW1 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.74□□□□□ -1.81
CCDC43Q96MW1 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.74□□□□□ -1.81
CCDC43Q96MW1 MLLT10P2-201ENST00000506434 249 ntBASIC3.74□□□□□ -1.81
CCDC43Q96MW1 RNU6-1028P-201ENST00000517164 93 ntBASIC3.74□□□□□ -1.81
CCDC43Q96MW1 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC3.74□□□□□ -1.81
CCDC43Q96MW1 AP001636.2-201ENST00000525517 696 ntBASIC3.74□□□□□ -1.81
CCDC43Q96MW1 DEFB130C-202ENST00000530001 230 ntBASIC3.74□□□□□ -1.81
CCDC43Q96MW1 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.74□□□□□ -1.81
CCDC43Q96MW1 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.74□□□□□ -1.81
CCDC43Q96MW1 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC3.74□□□□□ -1.81
CCDC43Q96MW1 AC138915.2-201ENST00000569776 97 ntBASIC3.74□□□□□ -1.81
CCDC43Q96MW1 AC008507.1-201ENST00000587506 734 ntBASIC3.74□□□□□ -1.81
CCDC43Q96MW1 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.74□□□□□ -1.81
CCDC43Q96MW1 AC067852.3-201ENST00000589177 561 ntBASIC3.74□□□□□ -1.81
CCDC43Q96MW1 AC127502.3-201ENST00000636170 1206 ntBASIC3.74□□□□□ -1.81
CCDC43Q96MW1 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.74□□□□□ -1.81
CCDC43Q96MW1 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC43Q96MW1 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC43Q96MW1 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC43Q96MW1 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC43Q96MW1 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
CCDC43Q96MW1 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.73□□□□□ -1.81
CCDC43Q96MW1 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.73□□□□□ -1.81
CCDC43Q96MW1 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC43Q96MW1 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
CCDC43Q96MW1 OR5H2-201ENST00000355273 945 ntBASIC3.73□□□□□ -1.81
CCDC43Q96MW1 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
CCDC43Q96MW1 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC43Q96MW1 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
CCDC43Q96MW1 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC43Q96MW1 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC3.73□□□□□ -1.81
CCDC43Q96MW1 PSMA6P3-201ENST00000428242 164 ntBASIC3.73□□□□□ -1.81
CCDC43Q96MW1 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.73□□□□□ -1.81
CCDC43Q96MW1 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.73□□□□□ -1.81
CCDC43Q96MW1 CAB39P1-201ENST00000502277 460 ntBASIC3.73□□□□□ -1.81
CCDC43Q96MW1 AC010460.2-201ENST00000509054 677 ntBASIC3.73□□□□□ -1.81
CCDC43Q96MW1 SNORA31.8-201ENST00000516327 108 ntBASIC3.73□□□□□ -1.81
CCDC43Q96MW1 RNU6-1261P-201ENST00000517194 104 ntBASIC3.73□□□□□ -1.81
CCDC43Q96MW1 RPL12P22-201ENST00000519073 490 ntBASIC3.73□□□□□ -1.81
CCDC43Q96MW1 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC3.73□□□□□ -1.81
CCDC43Q96MW1 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC3.73□□□□□ -1.81
CCDC43Q96MW1 AC018630.1-201ENST00000541376 925 ntBASIC3.73□□□□□ -1.81
CCDC43Q96MW1 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC3.73□□□□□ -1.81
CCDC43Q96MW1 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC3.73□□□□□ -1.81
CCDC43Q96MW1 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.73□□□□□ -1.81
CCDC43Q96MW1 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.73□□□□□ -1.81
CCDC43Q96MW1 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC3.73□□□□□ -1.81
CCDC43Q96MW1 MIR3186-201ENST00000577404 85 ntBASIC3.73□□□□□ -1.81
CCDC43Q96MW1 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.73□□□□□ -1.81
CCDC43Q96MW1 SNORD84-203ENST00000584275 78 ntBASIC3.73□□□□□ -1.81
CCDC43Q96MW1 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC3.73□□□□□ -1.81
CCDC43Q96MW1 AL109653.1-201ENST00000603091 248 ntBASIC3.73□□□□□ -1.81
CCDC43Q96MW1 AL035411.2-201ENST00000604022 421 ntBASIC3.73□□□□□ -1.81
CCDC43Q96MW1 AL390240.1-201ENST00000612950 384 ntBASIC3.73□□□□□ -1.81
CCDC43Q96MW1 AC253576.2-201ENST00000618815 580 ntBASIC3.73□□□□□ -1.81
CCDC43Q96MW1 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.73□□□□□ -1.81
CCDC43Q96MW1 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC43Q96MW1 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.73□□□□□ -1.81
CCDC43Q96MW1 AL049781.1-201ENST00000623195 3585 ntBASIC3.73□□□□□ -1.81
CCDC43Q96MW1 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.73□□□□□ -1.81
CCDC43Q96MW1 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC43Q96MW1 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC43Q96MW1 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC43Q96MW1 RNU1-75P-201ENST00000347264 129 ntBASIC3.72□□□□□ -1.81
CCDC43Q96MW1 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.72□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms