Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 U6.98-201ENST00000637157 84 ntBASIC4.13□□□□□ -1.75
SKA1Q96BD8 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
SKA1Q96BD8 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
SKA1Q96BD8 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
SKA1Q96BD8 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC4.12□□□□□ -1.75
SKA1Q96BD8 PTER-201ENST00000298942 3448 ntTSL 5 BASIC4.12□□□□□ -1.75
SKA1Q96BD8 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
SKA1Q96BD8 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SKA1Q96BD8 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
SKA1Q96BD8 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
SKA1Q96BD8 SNORA4.1-201ENST00000364263 144 ntBASIC4.12□□□□□ -1.75
SKA1Q96BD8 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
SKA1Q96BD8 PTMAP5-201ENST00000393073 333 ntBASIC4.12□□□□□ -1.75
SKA1Q96BD8 ATP5F1P3-201ENST00000397213 657 ntBASIC4.12□□□□□ -1.75
SKA1Q96BD8 Z98941.1-201ENST00000407764 100 ntBASIC4.12□□□□□ -1.75
SKA1Q96BD8 RN7SKP56-201ENST00000410513 331 ntBASIC4.12□□□□□ -1.75
SKA1Q96BD8 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC4.12□□□□□ -1.75
SKA1Q96BD8 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
SKA1Q96BD8 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC4.12□□□□□ -1.75
SKA1Q96BD8 OR6K5P-201ENST00000447050 945 ntBASIC4.12□□□□□ -1.75
SKA1Q96BD8 RSL24D1P3-201ENST00000449255 495 ntBASIC4.12□□□□□ -1.75
SKA1Q96BD8 SSXP4-201ENST00000451349 245 ntBASIC4.12□□□□□ -1.75
SKA1Q96BD8 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC4.12□□□□□ -1.75
SKA1Q96BD8 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC4.12□□□□□ -1.75
SKA1Q96BD8 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC4.12□□□□□ -1.75
SKA1Q96BD8 FTH1P21-201ENST00000512179 511 ntBASIC4.12□□□□□ -1.75
SKA1Q96BD8 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC4.12□□□□□ -1.75
SKA1Q96BD8 AC017037.2-201ENST00000513850 890 ntBASIC4.12□□□□□ -1.75
SKA1Q96BD8 AC022483.1-201ENST00000514020 567 ntBASIC4.12□□□□□ -1.75
SKA1Q96BD8 SNORA67.7-201ENST00000516664 135 ntBASIC4.12□□□□□ -1.75
SKA1Q96BD8 RNA5SP143-201ENST00000516936 115 ntBASIC4.12□□□□□ -1.75
SKA1Q96BD8 RNU6-714P-201ENST00000516963 103 ntBASIC4.12□□□□□ -1.75
SKA1Q96BD8 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC4.12□□□□□ -1.75
SKA1Q96BD8 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC4.12□□□□□ -1.75
SKA1Q96BD8 AC063950.1-201ENST00000552036 308 ntBASIC4.12□□□□□ -1.75
SKA1Q96BD8 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.12□□□□□ -1.75
SKA1Q96BD8 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC4.12□□□□□ -1.75
SKA1Q96BD8 AC008739.3-201ENST00000603262 127 ntBASIC4.12□□□□□ -1.75
SKA1Q96BD8 AC011330.2-201ENST00000621680 635 ntBASIC4.12□□□□□ -1.75
SKA1Q96BD8 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC4.12□□□□□ -1.75
SKA1Q96BD8 AL773545.4-201ENST00000637262 310 ntBASIC4.12□□□□□ -1.75
SKA1Q96BD8 AC008013.2-202ENST00000637965 364 ntBASIC4.12□□□□□ -1.75
SKA1Q96BD8 AL513478.4-201ENST00000641636 310 ntBASIC4.12□□□□□ -1.75
SKA1Q96BD8 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
SKA1Q96BD8 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.12□□□□□ -1.75
SKA1Q96BD8 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
SKA1Q96BD8 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SKA1Q96BD8 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SKA1Q96BD8 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC4.12□□□□□ -1.75
SKA1Q96BD8 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.12□□□□□ -1.75
SKA1Q96BD8 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.11□□□□□ -1.75
SKA1Q96BD8 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC4.11□□□□□ -1.75
SKA1Q96BD8 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC4.11□□□□□ -1.75
SKA1Q96BD8 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
SKA1Q96BD8 RNU6-97P-201ENST00000363387 104 ntBASIC4.11□□□□□ -1.75
SKA1Q96BD8 RNU6-343P-201ENST00000364709 104 ntBASIC4.11□□□□□ -1.75
SKA1Q96BD8 RNU6-359P-201ENST00000365466 108 ntBASIC4.11□□□□□ -1.75
SKA1Q96BD8 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
SKA1Q96BD8 PARD3-204ENST00000374768 799 ntTSL 3 BASIC4.11□□□□□ -1.75
SKA1Q96BD8 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
SKA1Q96BD8 RHEBP3-201ENST00000411920 351 ntBASIC4.11□□□□□ -1.75
SKA1Q96BD8 AL389915.1-201ENST00000422463 466 ntBASIC4.11□□□□□ -1.75
SKA1Q96BD8 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC4.11□□□□□ -1.75
SKA1Q96BD8 RPL27AP8-201ENST00000424277 446 ntBASIC4.11□□□□□ -1.75
SKA1Q96BD8 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC4.11□□□□□ -1.75
SKA1Q96BD8 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC4.11□□□□□ -1.75
SKA1Q96BD8 AL451062.2-201ENST00000427515 271 ntBASIC4.11□□□□□ -1.75
SKA1Q96BD8 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC4.11□□□□□ -1.75
SKA1Q96BD8 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC4.11□□□□□ -1.75
SKA1Q96BD8 MTND1P31-201ENST00000449206 961 ntBASIC4.11□□□□□ -1.75
SKA1Q96BD8 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.11□□□□□ -1.75
SKA1Q96BD8 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC4.11□□□□□ -1.75
SKA1Q96BD8 RN7SL542P-201ENST00000467147 294 ntBASIC4.11□□□□□ -1.75
SKA1Q96BD8 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC4.11□□□□□ -1.75
SKA1Q96BD8 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.11□□□□□ -1.75
SKA1Q96BD8 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC4.11□□□□□ -1.75
SKA1Q96BD8 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.11□□□□□ -1.75
SKA1Q96BD8 AC110760.3-202ENST00000515177 371 ntBASIC4.11□□□□□ -1.75
SKA1Q96BD8 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC4.11□□□□□ -1.75
SKA1Q96BD8 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC4.11□□□□□ -1.75
SKA1Q96BD8 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.11□□□□□ -1.75
SKA1Q96BD8 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC4.11□□□□□ -1.75
SKA1Q96BD8 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC4.11□□□□□ -1.75
SKA1Q96BD8 AP005205.1-201ENST00000563503 508 ntBASIC4.11□□□□□ -1.75
SKA1Q96BD8 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC4.11□□□□□ -1.75
SKA1Q96BD8 AC022655.2-201ENST00000577280 318 ntBASIC4.11□□□□□ -1.75
SKA1Q96BD8 MIR5685-201ENST00000579080 79 ntBASIC4.11□□□□□ -1.75
SKA1Q96BD8 COX6CP3-201ENST00000580869 223 ntBASIC4.11□□□□□ -1.75
SKA1Q96BD8 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC4.11□□□□□ -1.75
SKA1Q96BD8 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC4.11□□□□□ -1.75
SKA1Q96BD8 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC4.11□□□□□ -1.75
SKA1Q96BD8 AC106900.2-201ENST00000604994 317 ntBASIC4.11□□□□□ -1.75
SKA1Q96BD8 AL133507.1-201ENST00000605269 557 ntBASIC4.11□□□□□ -1.75
SKA1Q96BD8 AL034351.1-201ENST00000605288 668 ntBASIC4.11□□□□□ -1.75
SKA1Q96BD8 AC090186.1-201ENST00000605991 572 ntBASIC4.11□□□□□ -1.75
SKA1Q96BD8 RNU6-88P-201ENST00000606801 100 ntBASIC4.11□□□□□ -1.75
SKA1Q96BD8 AC092106.3-201ENST00000611308 722 ntBASIC4.11□□□□□ -1.75
SKA1Q96BD8 AL391261.4-201ENST00000616012 481 ntBASIC4.11□□□□□ -1.75
SKA1Q96BD8 AC002550.2-201ENST00000621246 394 ntBASIC4.11□□□□□ -1.75
SKA1Q96BD8 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 120.7 ms