Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 RNA5SP167-201ENST00000365461 116 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 TRAJ46-201ENST00000390491 63 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 MIR708-201ENST00000390708 88 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 RNU6-332P-201ENST00000391193 108 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 AL162578.1-201ENST00000406202 378 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 RNU4-26P-201ENST00000410270 107 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 RN7SKP140-201ENST00000411196 284 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 AL513331.1-201ENST00000411908 397 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 LINC00354-201ENST00000412119 347 ntTSL 5 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 RPL30P2-201ENST00000414021 291 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 LINC01811-201ENST00000415991 594 ntTSL 5 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 AL451054.2-201ENST00000420896 202 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 RPL21P66-201ENST00000426566 466 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 AC068287.1-201ENST00000430283 295 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 RPEP4-201ENST00000437636 602 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 MTND4LP16-201ENST00000440828 295 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 COL11A2P1-205ENST00000441798 676 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 AL121877.1-201ENST00000453704 622 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 RNU7-180P-201ENST00000459240 63 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 RPL21P99-201ENST00000480369 423 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 RPL31P13-201ENST00000484151 370 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 AC093870.1-201ENST00000506837 213 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 AC117522.3-201ENST00000507974 584 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 RNA5SP418-201ENST00000515951 117 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 SNORA31.3-201ENST00000516029 96 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 RNA5SP434-201ENST00000516647 121 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 SCARNA20.4-201ENST00000516969 131 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 AC027308.1-201ENST00000517993 110 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 AL137161.1-201ENST00000532231 390 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 MDM2-233ENST00000545204 398 ntTSL 5 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 MED28P6-201ENST00000558776 231 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 OR1E3-201ENST00000575608 948 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 AC005951.2-201ENST00000576282 495 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 AC008521.1-201ENST00000587471 187 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 AL138889.2-201ENST00000603883 242 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 AP001330.4-201ENST00000604350 154 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 AP002826.1-201ENST00000608835 315 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 AC015813.4-201ENST00000610469 179 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 uc_338.34-201ENST00000617467 174 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 CT45A6-202ENST00000620654 878 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 AC087190.4-201ENST00000574616 8334 ntBASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.29□□□□□ -1.72
CLRN3Q8NCR9 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC4.28□□□□□ -1.72
CLRN3Q8NCR9 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
CLRN3Q8NCR9 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CLRN3Q8NCR9 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.28□□□□□ -1.72
CLRN3Q8NCR9 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.28□□□□□ -1.72
CLRN3Q8NCR9 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CLRN3Q8NCR9 MIR448-201ENST00000362131 111 ntBASIC4.28□□□□□ -1.72
CLRN3Q8NCR9 RNA5SP308-201ENST00000362532 115 ntBASIC4.28□□□□□ -1.72
CLRN3Q8NCR9 Y_RNA.100-201ENST00000363141 102 ntBASIC4.28□□□□□ -1.72
CLRN3Q8NCR9 RN7SKP6-201ENST00000364795 319 ntBASIC4.28□□□□□ -1.72
CLRN3Q8NCR9 MT-TD-201ENST00000387419 68 ntBASIC4.28□□□□□ -1.72
CLRN3Q8NCR9 RNU6-550P-201ENST00000391057 101 ntBASIC4.28□□□□□ -1.72
CLRN3Q8NCR9 HSPA8P15-201ENST00000401676 786 ntBASIC4.28□□□□□ -1.72
CLRN3Q8NCR9 RN7SKP114-201ENST00000410327 279 ntBASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 128 ms