Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
HOXD3P31249 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXD3P31249 AC008033.1-201ENST00000216407 1162 ntBASIC3.62□□□□□ -1.83
HOXD3P31249 Y_RNA.159-201ENST00000363674 87 ntBASIC3.62□□□□□ -1.83
HOXD3P31249 RN7SKP227-201ENST00000364445 330 ntBASIC3.62□□□□□ -1.83
HOXD3P31249 RNY4P16-201ENST00000364768 94 ntBASIC3.62□□□□□ -1.83
HOXD3P31249 Y_RNA.402-201ENST00000383972 102 ntBASIC3.62□□□□□ -1.83
HOXD3P31249 SNORA70F-201ENST00000384142 135 ntBASIC3.62□□□□□ -1.83
HOXD3P31249 Z98745.1-201ENST00000402553 494 ntBASIC3.62□□□□□ -1.83
HOXD3P31249 SNX10-203ENST00000409367 746 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXD3P31249 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC3.62□□□□□ -1.83
HOXD3P31249 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXD3P31249 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXD3P31249 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC3.62□□□□□ -1.83
HOXD3P31249 EIF4HP2-201ENST00000424380 563 ntBASIC3.62□□□□□ -1.83
HOXD3P31249 MTCO1P20-201ENST00000425366 358 ntBASIC3.62□□□□□ -1.83
HOXD3P31249 RPEP3-201ENST00000425462 676 ntBASIC3.62□□□□□ -1.83
HOXD3P31249 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC3.62□□□□□ -1.83
HOXD3P31249 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXD3P31249 CBX1P1-201ENST00000440184 427 ntBASIC3.62□□□□□ -1.83
HOXD3P31249 BTF3P6-201ENST00000448054 499 ntBASIC3.62□□□□□ -1.83
HOXD3P31249 NDUFS5P3-201ENST00000450668 321 ntBASIC3.62□□□□□ -1.83
HOXD3P31249 AL353691.1-201ENST00000451332 387 ntBASIC3.62□□□□□ -1.83
HOXD3P31249 MTND1P12-201ENST00000455231 147 ntBASIC3.62□□□□□ -1.83
HOXD3P31249 AP1S2P1-201ENST00000457344 379 ntBASIC3.62□□□□□ -1.83
HOXD3P31249 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXD3P31249 S100A11P1-201ENST00000477525 312 ntBASIC3.62□□□□□ -1.83
HOXD3P31249 AC025164.1-201ENST00000496249 478 ntBASIC3.62□□□□□ -1.83
HOXD3P31249 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXD3P31249 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC3.62□□□□□ -1.83
HOXD3P31249 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXD3P31249 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC3.62□□□□□ -1.83
HOXD3P31249 AC008549.1-201ENST00000512900 643 ntBASIC3.62□□□□□ -1.83
HOXD3P31249 AC010493.1-201ENST00000513479 292 ntBASIC3.62□□□□□ -1.83
HOXD3P31249 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXD3P31249 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXD3P31249 AP000907.2-201ENST00000530827 353 ntBASIC3.62□□□□□ -1.83
HOXD3P31249 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXD3P31249 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXD3P31249 AL356432.3-201ENST00000568952 465 ntBASIC3.62□□□□□ -1.83
HOXD3P31249 RN7SL652P-201ENST00000577769 300 ntBASIC3.62□□□□□ -1.83
HOXD3P31249 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXD3P31249 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC3.62□□□□□ -1.83
HOXD3P31249 AC006504.3-201ENST00000586818 523 ntBASIC3.62□□□□□ -1.83
HOXD3P31249 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC3.62□□□□□ -1.83
HOXD3P31249 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC3.62□□□□□ -1.83
HOXD3P31249 AC011468.4-201ENST00000603942 409 ntBASIC3.62□□□□□ -1.83
HOXD3P31249 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC3.62□□□□□ -1.83
HOXD3P31249 AC121334.2-201ENST00000605387 271 ntBASIC3.62□□□□□ -1.83
HOXD3P31249 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXD3P31249 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXD3P31249 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HOXD3P31249 AC002553.4-201ENST00000616896 331 ntBASIC3.62□□□□□ -1.83
HOXD3P31249 AL596245.1-201ENST00000618994 362 ntBASIC3.62□□□□□ -1.83
HOXD3P31249 AC099654.14-201ENST00000638599 341 ntBASIC3.62□□□□□ -1.83
HOXD3P31249 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXD3P31249 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXD3P31249 ZFRP1-201ENST00000457579 2970 ntBASIC3.62□□□□□ -1.83
HOXD3P31249 HSP90AA5P-201ENST00000438353 2192 ntBASIC3.62□□□□□ -1.83
HOXD3P31249 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HOXD3P31249 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXD3P31249 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXD3P31249 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXD3P31249 AC007390.2-201ENST00000606229 3803 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXD3P31249 AL136964.1-201ENST00000622038 2990 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.61□□□□□ -1.83
HOXD3P31249 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXD3P31249 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXD3P31249 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HOXD3P31249 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HOXD3P31249 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXD3P31249 FRG1BP-201ENST00000278882 761 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXD3P31249 RNA5SP258-201ENST00000362750 119 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 RNU6-97P-201ENST00000363387 104 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 SNORD113.2-201ENST00000364166 89 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 SNORA71.2-201ENST00000364941 134 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 U3.29-201ENST00000391296 212 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 AL590762.2-201ENST00000395798 571 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 RNU4-25P-201ENST00000410569 230 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 RN7SKP235-201ENST00000410662 305 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXD3P31249 AC009237.5-201ENST00000414271 501 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 HMGB3P20-201ENST00000417997 600 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 AC140479.3-201ENST00000418944 1126 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 TRIM60P10Y-201ENST00000425589 751 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 AL732292.1-201ENST00000426692 226 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 AC006548.1-201ENST00000427470 102 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 AC133104.1-201ENST00000429100 218 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXD3P31249 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXD3P31249 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC3.61□□□□□ -1.83
HOXD3P31249 TRIM60P8Y-201ENST00000436338 762 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXD3P31249 DPPA3P1-201ENST00000448050 469 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXD3P31249 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXD3P31249 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXD3P31249 snoU13.8-201ENST00000458890 104 ntBASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms