Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
MSX1P28360 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
MSX1P28360 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.56□□□□□ -1.52
MSX1P28360 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC5.56□□□□□ -1.52
MSX1P28360 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC5.56□□□□□ -1.52
MSX1P28360 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
MSX1P28360 OR52B3P-201ENST00000314715 928 ntBASIC5.56□□□□□ -1.52
MSX1P28360 RNY1-201ENST00000364228 113 ntBASIC5.56□□□□□ -1.52
MSX1P28360 Y_RNA.274-201ENST00000364714 101 ntBASIC5.56□□□□□ -1.52
MSX1P28360 SNORD51-201ENST00000384320 80 ntBASIC5.56□□□□□ -1.52
MSX1P28360 AP000275.1-201ENST00000411943 390 ntBASIC5.56□□□□□ -1.52
MSX1P28360 HNRNPA1P18-201ENST00000433537 927 ntBASIC5.56□□□□□ -1.52
MSX1P28360 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC5.56□□□□□ -1.52
MSX1P28360 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC5.56□□□□□ -1.52
MSX1P28360 RPS3AP46-201ENST00000448352 682 ntBASIC5.56□□□□□ -1.52
MSX1P28360 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC5.56□□□□□ -1.52
MSX1P28360 AL139109.1-201ENST00000455491 297 ntBASIC5.56□□□□□ -1.52
MSX1P28360 AP000942.1-201ENST00000463969 747 ntBASIC5.56□□□□□ -1.52
MSX1P28360 AC083795.1-201ENST00000491760 320 ntBASIC5.56□□□□□ -1.52
MSX1P28360 AC018437.1-201ENST00000492214 406 ntBASIC5.56□□□□□ -1.52
MSX1P28360 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.56□□□□□ -1.52
MSX1P28360 RNA5SP271-201ENST00000516700 88 ntBASIC5.56□□□□□ -1.52
MSX1P28360 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.56□□□□□ -1.52
MSX1P28360 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC5.56□□□□□ -1.52
MSX1P28360 AC007494.1-201ENST00000562293 760 ntBASIC5.56□□□□□ -1.52
MSX1P28360 MIR3133-201ENST00000583157 78 ntBASIC5.56□□□□□ -1.52
MSX1P28360 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC5.56□□□□□ -1.52
MSX1P28360 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
MSX1P28360 AL390123.1-201ENST00000603216 237 ntBASIC5.56□□□□□ -1.52
MSX1P28360 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC5.56□□□□□ -1.52
MSX1P28360 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC5.56□□□□□ -1.52
MSX1P28360 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
MSX1P28360 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
MSX1P28360 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
MSX1P28360 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
MSX1P28360 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
MSX1P28360 HSP90AA5P-201ENST00000438353 2192 ntBASIC5.56□□□□□ -1.52
MSX1P28360 AC024587.1-201ENST00000505925 2157 ntBASIC5.56□□□□□ -1.52
MSX1P28360 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
MSX1P28360 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
MSX1P28360 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
MSX1P28360 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
MSX1P28360 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
MSX1P28360 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
MSX1P28360 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
MSX1P28360 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.55□□□□□ -1.52
MSX1P28360 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
MSX1P28360 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
MSX1P28360 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
MSX1P28360 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
MSX1P28360 RNA5SP375-201ENST00000362975 119 ntBASIC5.55□□□□□ -1.52
MSX1P28360 RNY1P16-201ENST00000363063 111 ntBASIC5.55□□□□□ -1.52
MSX1P28360 RNVU1-3-201ENST00000364313 161 ntBASIC5.55□□□□□ -1.52
MSX1P28360 RNA5SP284-201ENST00000384547 118 ntBASIC5.55□□□□□ -1.52
MSX1P28360 MIR625-201ENST00000385047 85 ntBASIC5.55□□□□□ -1.52
MSX1P28360 RNU11-4P-201ENST00000391149 133 ntBASIC5.55□□□□□ -1.52
MSX1P28360 HMGB1P20-201ENST00000402555 677 ntBASIC5.55□□□□□ -1.52
MSX1P28360 RNA5SP178-201ENST00000410380 128 ntBASIC5.55□□□□□ -1.52
MSX1P28360 RNU4-65P-201ENST00000410473 140 ntBASIC5.55□□□□□ -1.52
MSX1P28360 RNA5SP251-201ENST00000410614 137 ntBASIC5.55□□□□□ -1.52
MSX1P28360 AC245096.1-201ENST00000413104 546 ntBASIC5.55□□□□□ -1.52
MSX1P28360 AL096829.1-201ENST00000413677 457 ntBASIC5.55□□□□□ -1.52
MSX1P28360 MTND6P12-201ENST00000428247 522 ntBASIC5.55□□□□□ -1.52
MSX1P28360 C4BPAP2-201ENST00000428434 478 ntBASIC5.55□□□□□ -1.52
MSX1P28360 MYL8P-204ENST00000431574 518 ntBASIC5.55□□□□□ -1.52
MSX1P28360 AL354710.1-201ENST00000453641 246 ntBASIC5.55□□□□□ -1.52
MSX1P28360 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC5.55□□□□□ -1.52
MSX1P28360 AC008481.1-201ENST00000463278 396 ntBASIC5.55□□□□□ -1.52
MSX1P28360 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC5.55□□□□□ -1.52
MSX1P28360 RN7SKP238-201ENST00000516483 249 ntBASIC5.55□□□□□ -1.52
MSX1P28360 Y_RNA.689-201ENST00000516589 107 ntBASIC5.55□□□□□ -1.52
MSX1P28360 RNA5SP340-201ENST00000517132 107 ntBASIC5.55□□□□□ -1.52
MSX1P28360 AC144568.1-201ENST00000520139 137 ntBASIC5.55□□□□□ -1.52
MSX1P28360 MAL2-201ENST00000522112 573 ntTSL 4 BASIC5.55□□□□□ -1.52
MSX1P28360 LECT2-205ENST00000522943 574 ntTSL 3 BASIC5.55□□□□□ -1.52
MSX1P28360 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC5.55□□□□□ -1.52
MSX1P28360 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC5.55□□□□□ -1.52
MSX1P28360 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC5.55□□□□□ -1.52
MSX1P28360 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC5.55□□□□□ -1.52
MSX1P28360 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC5.55□□□□□ -1.52
MSX1P28360 AC119403.2-201ENST00000590960 598 ntBASIC5.55□□□□□ -1.52
MSX1P28360 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC5.55□□□□□ -1.52
MSX1P28360 RPS29P30-201ENST00000600975 111 ntBASIC5.55□□□□□ -1.52
MSX1P28360 AC012119.1-201ENST00000603184 222 ntBASIC5.55□□□□□ -1.52
MSX1P28360 AC002044.1-201ENST00000606707 158 ntBASIC5.55□□□□□ -1.52
MSX1P28360 AC022467.1-201ENST00000614738 749 ntBASIC5.55□□□□□ -1.52
MSX1P28360 AC127459.3-201ENST00000624328 466 ntBASIC5.55□□□□□ -1.52
MSX1P28360 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC5.55□□□□□ -1.52
MSX1P28360 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC5.55□□□□□ -1.52
MSX1P28360 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
MSX1P28360 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
MSX1P28360 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
MSX1P28360 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
MSX1P28360 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
MSX1P28360 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC5.55□□□□□ -1.52
MSX1P28360 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC5.54□□□□□ -1.52
MSX1P28360 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC5.54□□□□□ -1.52
MSX1P28360 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
MSX1P28360 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC5.54□□□□□ -1.52
MSX1P28360 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 126.6 ms