Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 RNU6-259P-201ENST00000383999 107 ntBASIC4.62□□□□□ -1.67
COL3A1P02461 RNU6-116P-201ENST00000384042 109 ntBASIC4.62□□□□□ -1.67
COL3A1P02461 RNU6-549P-201ENST00000384433 107 ntBASIC4.62□□□□□ -1.67
COL3A1P02461 RNU6-253P-201ENST00000384730 105 ntBASIC4.62□□□□□ -1.67
COL3A1P02461 RNY3P10-201ENST00000384764 102 ntBASIC4.62□□□□□ -1.67
COL3A1P02461 TPMTP3-201ENST00000411928 735 ntBASIC4.62□□□□□ -1.67
COL3A1P02461 AL109913.1-201ENST00000421173 514 ntBASIC4.62□□□□□ -1.67
COL3A1P02461 MRPS36P1-201ENST00000421291 307 ntBASIC4.62□□□□□ -1.67
COL3A1P02461 AC006989.1-201ENST00000427212 131 ntBASIC4.62□□□□□ -1.67
COL3A1P02461 AC005326.1-201ENST00000429197 123 ntBASIC4.62□□□□□ -1.67
COL3A1P02461 ATP5F1P1-201ENST00000433775 569 ntBASIC4.62□□□□□ -1.67
COL3A1P02461 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC4.62□□□□□ -1.67
COL3A1P02461 AC093155.1-201ENST00000440164 826 ntBASIC4.62□□□□□ -1.67
COL3A1P02461 MTCO3P18-201ENST00000440206 761 ntBASIC4.62□□□□□ -1.67
COL3A1P02461 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC4.62□□□□□ -1.67
COL3A1P02461 RPL21P134-201ENST00000453468 483 ntBASIC4.62□□□□□ -1.67
COL3A1P02461 TPT1P7-201ENST00000458300 517 ntBASIC4.62□□□□□ -1.67
COL3A1P02461 AC098799.2-201ENST00000509466 868 ntBASIC4.62□□□□□ -1.67
COL3A1P02461 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
COL3A1P02461 AC046134.1-201ENST00000514454 666 ntBASIC4.62□□□□□ -1.67
COL3A1P02461 snoZ278.1-201ENST00000517059 112 ntBASIC4.62□□□□□ -1.67
COL3A1P02461 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC4.62□□□□□ -1.67
COL3A1P02461 KCTD9P6-201ENST00000522306 950 ntBASIC4.62□□□□□ -1.67
COL3A1P02461 AP001207.1-201ENST00000524051 481 ntBASIC4.62□□□□□ -1.67
COL3A1P02461 AP005639.2-201ENST00000527592 928 ntBASIC4.62□□□□□ -1.67
COL3A1P02461 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC4.62□□□□□ -1.67
COL3A1P02461 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC4.62□□□□□ -1.67
COL3A1P02461 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC4.62□□□□□ -1.67
COL3A1P02461 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC4.62□□□□□ -1.67
COL3A1P02461 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC4.62□□□□□ -1.67
COL3A1P02461 AC020914.4-201ENST00000597690 277 ntBASIC4.62□□□□□ -1.67
COL3A1P02461 AC068790.5-201ENST00000602741 355 ntBASIC4.62□□□□□ -1.67
COL3A1P02461 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.62□□□□□ -1.67
COL3A1P02461 TEX41-280ENST00000629185 591 ntTSL 5 BASIC4.62□□□□□ -1.67
COL3A1P02461 PCMTD1P7-201ENST00000634506 357 ntBASIC4.62□□□□□ -1.67
COL3A1P02461 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC4.61□□□□□ -1.67
COL3A1P02461 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.61□□□□□ -1.67
COL3A1P02461 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
COL3A1P02461 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL3A1P02461 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
COL3A1P02461 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
COL3A1P02461 ATP8A2P3-201ENST00000426792 1536 ntBASIC4.61□□□□□ -1.67
COL3A1P02461 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL3A1P02461 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL3A1P02461 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
COL3A1P02461 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL3A1P02461 RNU4-91P-201ENST00000364778 135 ntBASIC4.61□□□□□ -1.67
COL3A1P02461 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
COL3A1P02461 RNU6-316P-201ENST00000391027 107 ntBASIC4.61□□□□□ -1.67
COL3A1P02461 TAF9BP1-201ENST00000396646 746 ntBASIC4.61□□□□□ -1.67
COL3A1P02461 AL079342.2-201ENST00000403367 482 ntBASIC4.61□□□□□ -1.67
COL3A1P02461 RNU2-41P-201ENST00000410991 178 ntBASIC4.61□□□□□ -1.67
COL3A1P02461 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC4.61□□□□□ -1.67
COL3A1P02461 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC4.61□□□□□ -1.67
COL3A1P02461 AC097713.2-201ENST00000430199 356 ntBASIC4.61□□□□□ -1.67
COL3A1P02461 MTCO2P11-201ENST00000431069 680 ntBASIC4.61□□□□□ -1.67
COL3A1P02461 AL035458.1-201ENST00000433096 585 ntBASIC4.61□□□□□ -1.67
COL3A1P02461 MTND3P21-201ENST00000433774 331 ntBASIC4.61□□□□□ -1.67
COL3A1P02461 AC005019.1-201ENST00000436455 431 ntBASIC4.61□□□□□ -1.67
COL3A1P02461 Z75741.1-201ENST00000446793 314 ntBASIC4.61□□□□□ -1.67
COL3A1P02461 TPT1P14-201ENST00000448018 505 ntBASIC4.61□□□□□ -1.67
COL3A1P02461 AC092001.1-201ENST00000453012 261 ntBASIC4.61□□□□□ -1.67
COL3A1P02461 SSXP1-201ENST00000453640 473 ntBASIC4.61□□□□□ -1.67
COL3A1P02461 RNA5SP269-201ENST00000459032 137 ntBASIC4.61□□□□□ -1.67
COL3A1P02461 CCDC75P1-201ENST00000469247 791 ntBASIC4.61□□□□□ -1.67
COL3A1P02461 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC4.61□□□□□ -1.67
COL3A1P02461 NCOR1P1-202ENST00000486162 291 ntBASIC4.61□□□□□ -1.67
COL3A1P02461 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC4.61□□□□□ -1.67
COL3A1P02461 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC4.61□□□□□ -1.67
COL3A1P02461 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC4.61□□□□□ -1.67
COL3A1P02461 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
COL3A1P02461 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC4.61□□□□□ -1.67
COL3A1P02461 AC004217.3-201ENST00000551552 878 ntBASIC4.61□□□□□ -1.67
COL3A1P02461 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC4.61□□□□□ -1.67
COL3A1P02461 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC4.61□□□□□ -1.67
COL3A1P02461 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC4.61□□□□□ -1.67
COL3A1P02461 AC008507.1-201ENST00000587506 734 ntBASIC4.61□□□□□ -1.67
COL3A1P02461 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC4.61□□□□□ -1.67
COL3A1P02461 AC112220.3-201ENST00000605502 502 ntBASIC4.61□□□□□ -1.67
COL3A1P02461 AC010133.1-201ENST00000615809 842 ntBASIC4.61□□□□□ -1.67
COL3A1P02461 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC4.61□□□□□ -1.67
COL3A1P02461 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC4.61□□□□□ -1.67
COL3A1P02461 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
COL3A1P02461 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC4.61□□□□□ -1.67
COL3A1P02461 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC4.61□□□□□ -1.67
COL3A1P02461 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.6□□□□□ -1.67
COL3A1P02461 ELF2P3-201ENST00000445099 1506 ntBASIC4.6□□□□□ -1.67
COL3A1P02461 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.6□□□□□ -1.67
COL3A1P02461 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC4.6□□□□□ -1.67
COL3A1P02461 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
COL3A1P02461 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.6□□□□□ -1.67
COL3A1P02461 TTC39DP-201ENST00000416781 1688 ntBASIC4.6□□□□□ -1.67
COL3A1P02461 CDY11P-201ENST00000447168 1651 ntBASIC4.6□□□□□ -1.67
COL3A1P02461 RNU6-500P-201ENST00000362349 107 ntBASIC4.6□□□□□ -1.67
COL3A1P02461 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
COL3A1P02461 RNA5SP229-201ENST00000410809 99 ntBASIC4.6□□□□□ -1.67
COL3A1P02461 PAICSP7-201ENST00000419829 962 ntBASIC4.6□□□□□ -1.67
COL3A1P02461 CYCSP46-201ENST00000423569 204 ntBASIC4.6□□□□□ -1.67
COL3A1P02461 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC4.6□□□□□ -1.67
COL3A1P02461 TRIM60P18-201ENST00000441518 828 ntBASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 91.9 ms