Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.37□□□□□ -1.87
SDC3O75056 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
SDC3O75056 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.37□□□□□ -1.87
SDC3O75056 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SDC3O75056 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.37□□□□□ -1.87
SDC3O75056 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
SDC3O75056 AC007256.1-201ENST00000392253 2765 ntBASIC3.37□□□□□ -1.87
SDC3O75056 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SDC3O75056 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SDC3O75056 AC010733.2-201ENST00000589496 5702 ntBASIC3.37□□□□□ -1.87
SDC3O75056 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.36□□□□□ -1.87
SDC3O75056 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.36□□□□□ -1.87
SDC3O75056 AP005901.5-201ENST00000545779 1796 ntBASIC3.36□□□□□ -1.87
SDC3O75056 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
SDC3O75056 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.36□□□□□ -1.87
SDC3O75056 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
SDC3O75056 RNA5SP374-201ENST00000362939 125 ntBASIC3.36□□□□□ -1.87
SDC3O75056 RNU6-492P-201ENST00000363035 104 ntBASIC3.36□□□□□ -1.87
SDC3O75056 RNA5SP197-201ENST00000363357 119 ntBASIC3.36□□□□□ -1.87
SDC3O75056 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
SDC3O75056 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SDC3O75056 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
SDC3O75056 SNORA48.5-201ENST00000391143 135 ntBASIC3.36□□□□□ -1.87
SDC3O75056 AP000567.1-201ENST00000406413 156 ntBASIC3.36□□□□□ -1.87
SDC3O75056 SNORA11.2-201ENST00000408318 127 ntBASIC3.36□□□□□ -1.87
SDC3O75056 LUZP4P1-201ENST00000415420 344 ntBASIC3.36□□□□□ -1.87
SDC3O75056 AC002075.2-201ENST00000425207 252 ntBASIC3.36□□□□□ -1.87
SDC3O75056 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC3.36□□□□□ -1.87
SDC3O75056 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC3.36□□□□□ -1.87
SDC3O75056 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC3.36□□□□□ -1.87
SDC3O75056 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC3.36□□□□□ -1.87
SDC3O75056 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.36□□□□□ -1.87
SDC3O75056 TXNP1-201ENST00000441872 371 ntBASIC3.36□□□□□ -1.87
SDC3O75056 AL671855.1-201ENST00000446875 1203 ntBASIC3.36□□□□□ -1.87
SDC3O75056 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
SDC3O75056 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC3.36□□□□□ -1.87
SDC3O75056 RPS20P24-201ENST00000457473 361 ntBASIC3.36□□□□□ -1.87
SDC3O75056 PNPLA4P1-201ENST00000458328 305 ntBASIC3.36□□□□□ -1.87
SDC3O75056 AC084357.1-201ENST00000473404 255 ntBASIC3.36□□□□□ -1.87
SDC3O75056 AC093767.1-201ENST00000504523 156 ntBASIC3.36□□□□□ -1.87
SDC3O75056 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SDC3O75056 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SDC3O75056 SNORA48.10-201ENST00000516965 160 ntBASIC3.36□□□□□ -1.87
SDC3O75056 SCARNA1-201ENST00000517138 166 ntBASIC3.36□□□□□ -1.87
SDC3O75056 AC021451.1-201ENST00000523498 1129 ntBASIC3.36□□□□□ -1.87
SDC3O75056 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.36□□□□□ -1.87
SDC3O75056 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.36□□□□□ -1.87
SDC3O75056 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.36□□□□□ -1.87
SDC3O75056 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC3.36□□□□□ -1.87
SDC3O75056 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.36□□□□□ -1.87
SDC3O75056 MIR5680-201ENST00000577577 84 ntBASIC3.36□□□□□ -1.87
SDC3O75056 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.36□□□□□ -1.87
SDC3O75056 AL365503.1-201ENST00000605247 905 ntBASIC3.36□□□□□ -1.87
SDC3O75056 AC069545.1-201ENST00000605671 358 ntBASIC3.36□□□□□ -1.87
SDC3O75056 PART1_2.1-201ENST00000612397 250 ntBASIC3.36□□□□□ -1.87
SDC3O75056 AC009318.4-201ENST00000620496 486 ntBASIC3.36□□□□□ -1.87
SDC3O75056 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.36□□□□□ -1.87
SDC3O75056 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.36□□□□□ -1.87
SDC3O75056 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SDC3O75056 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
SDC3O75056 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SDC3O75056 AL672296.1-201ENST00000427780 2158 ntBASIC3.35□□□□□ -1.87
SDC3O75056 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
SDC3O75056 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.35□□□□□ -1.87
SDC3O75056 ZNF826P-207ENST00000622273 1910 ntBASIC3.35□□□□□ -1.87
SDC3O75056 RNU6-50P-201ENST00000362356 103 ntBASIC3.35□□□□□ -1.87
SDC3O75056 TAF9BP1-201ENST00000396646 746 ntBASIC3.35□□□□□ -1.87
SDC3O75056 SLC9B1P2-201ENST00000398120 1184 ntBASIC3.35□□□□□ -1.87
SDC3O75056 U3.39-201ENST00000408569 239 ntBASIC3.35□□□□□ -1.87
SDC3O75056 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SDC3O75056 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC3.35□□□□□ -1.87
SDC3O75056 AL449283.1-202ENST00000418249 604 ntBASIC3.35□□□□□ -1.87
SDC3O75056 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC3.35□□□□□ -1.87
SDC3O75056 SEPT7P5-201ENST00000434048 306 ntBASIC3.35□□□□□ -1.87
SDC3O75056 MTCYBP31-201ENST00000438855 1122 ntBASIC3.35□□□□□ -1.87
SDC3O75056 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC3.35□□□□□ -1.87
SDC3O75056 AC112492.1-201ENST00000449607 712 ntBASIC3.35□□□□□ -1.87
SDC3O75056 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.35□□□□□ -1.87
SDC3O75056 snoU13.4-201ENST00000458916 104 ntBASIC3.35□□□□□ -1.87
SDC3O75056 AC104164.3-201ENST00000467363 1258 ntBASIC3.35□□□□□ -1.87
SDC3O75056 PABPC1P3-201ENST00000469174 459 ntBASIC3.35□□□□□ -1.87
SDC3O75056 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC3.35□□□□□ -1.87
SDC3O75056 RPL7P38-201ENST00000488396 739 ntBASIC3.35□□□□□ -1.87
SDC3O75056 RPL21P131-201ENST00000497298 483 ntBASIC3.35□□□□□ -1.87
SDC3O75056 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.35□□□□□ -1.87
SDC3O75056 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.35□□□□□ -1.87
SDC3O75056 PHBP14-201ENST00000512887 367 ntBASIC3.35□□□□□ -1.87
SDC3O75056 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC3.35□□□□□ -1.87
SDC3O75056 RNU1-103P-201ENST00000516502 125 ntBASIC3.35□□□□□ -1.87
SDC3O75056 RNU6-579P-201ENST00000516879 102 ntBASIC3.35□□□□□ -1.87
SDC3O75056 AC093331.1-201ENST00000521474 169 ntBASIC3.35□□□□□ -1.87
SDC3O75056 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.35□□□□□ -1.87
SDC3O75056 HIGD1AP10-201ENST00000527837 282 ntBASIC3.35□□□□□ -1.87
SDC3O75056 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SDC3O75056 AL121576.1-201ENST00000556055 276 ntBASIC3.35□□□□□ -1.87
SDC3O75056 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC3.35□□□□□ -1.87
SDC3O75056 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SDC3O75056 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC3.35□□□□□ -1.87
SDC3O75056 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.35□□□□□ -1.87
SDC3O75056 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms