Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 VN1R85P-201ENST00000601587 426 ntBASIC2.22□□□□□ -2.05
HMGB3O15347 AL355812.1-201ENST00000603215 216 ntBASIC2.22□□□□□ -2.05
HMGB3O15347 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
HMGB3O15347 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.22□□□□□ -2.05
HMGB3O15347 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC2.22□□□□□ -2.05
HMGB3O15347 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC2.22□□□□□ -2.05
HMGB3O15347 U4.3-201ENST00000621047 82 ntBASIC2.22□□□□□ -2.05
HMGB3O15347 AC010297.1-201ENST00000623948 149 ntBASIC2.22□□□□□ -2.05
HMGB3O15347 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
HMGB3O15347 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC2.21□□□□□ -2.06
HMGB3O15347 MIRLET7G-201ENST00000362280 84 ntBASIC2.21□□□□□ -2.06
HMGB3O15347 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
HMGB3O15347 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC2.21□□□□□ -2.06
HMGB3O15347 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
HMGB3O15347 MIR937-201ENST00000401271 86 ntBASIC2.21□□□□□ -2.06
HMGB3O15347 RN7SKP263-201ENST00000411194 309 ntBASIC2.21□□□□□ -2.06
HMGB3O15347 AC096533.1-201ENST00000411645 353 ntBASIC2.21□□□□□ -2.06
HMGB3O15347 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC2.21□□□□□ -2.06
HMGB3O15347 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC2.21□□□□□ -2.06
HMGB3O15347 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC2.21□□□□□ -2.06
HMGB3O15347 AC114973.1-201ENST00000429057 632 ntBASIC2.21□□□□□ -2.06
HMGB3O15347 RPS20P5-201ENST00000434808 360 ntBASIC2.21□□□□□ -2.06
HMGB3O15347 AC097499.1-201ENST00000444277 208 ntBASIC2.21□□□□□ -2.06
HMGB3O15347 AC233982.1-201ENST00000451247 436 ntBASIC2.21□□□□□ -2.06
HMGB3O15347 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.21□□□□□ -2.06
HMGB3O15347 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC2.21□□□□□ -2.06
HMGB3O15347 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC2.21□□□□□ -2.06
HMGB3O15347 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC2.21□□□□□ -2.06
HMGB3O15347 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.21□□□□□ -2.06
HMGB3O15347 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC2.21□□□□□ -2.06
HMGB3O15347 AC008716.1-201ENST00000511084 513 ntBASIC2.21□□□□□ -2.06
HMGB3O15347 HMGB1P47-201ENST00000511281 589 ntBASIC2.21□□□□□ -2.06
HMGB3O15347 SNORA31.13-201ENST00000516624 135 ntBASIC2.21□□□□□ -2.06
HMGB3O15347 OR10V3P-201ENST00000525712 725 ntBASIC2.21□□□□□ -2.06
HMGB3O15347 AC024341.1-201ENST00000526444 1552 ntBASIC2.21□□□□□ -2.06
HMGB3O15347 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
HMGB3O15347 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC2.21□□□□□ -2.06
HMGB3O15347 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
HMGB3O15347 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC2.21□□□□□ -2.06
HMGB3O15347 ARL1-211ENST00000551828 776 ntTSL 5 BASIC2.21□□□□□ -2.06
HMGB3O15347 AC009163.5-201ENST00000575421 637 ntBASIC2.21□□□□□ -2.06
HMGB3O15347 AC008739.2-201ENST00000597006 317 ntBASIC2.21□□□□□ -2.06
HMGB3O15347 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.21□□□□□ -2.06
HMGB3O15347 AL356575.1-201ENST00000603008 283 ntBASIC2.21□□□□□ -2.06
HMGB3O15347 AP001330.4-201ENST00000604350 154 ntBASIC2.21□□□□□ -2.06
HMGB3O15347 HSPE1P7-201ENST00000604681 321 ntBASIC2.21□□□□□ -2.06
HMGB3O15347 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC2.21□□□□□ -2.06
HMGB3O15347 CR392039.5-201ENST00000623201 510 ntBASIC2.21□□□□□ -2.06
HMGB3O15347 FO624990.1-201ENST00000636373 85 ntBASIC2.21□□□□□ -2.06
HMGB3O15347 FAM35BP-202ENST00000497389 3337 ntBASIC2.2□□□□□ -2.06
HMGB3O15347 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
HMGB3O15347 AC104446.1-201ENST00000613728 1321 ntBASIC2.2□□□□□ -2.06
HMGB3O15347 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.2□□□□□ -2.06
HMGB3O15347 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
HMGB3O15347 RNU1-33P-201ENST00000364249 162 ntBASIC2.2□□□□□ -2.06
HMGB3O15347 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
HMGB3O15347 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
HMGB3O15347 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
HMGB3O15347 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
HMGB3O15347 EIF4EBP2P3-201ENST00000403144 334 ntBASIC2.2□□□□□ -2.06
HMGB3O15347 VTA1P1-201ENST00000414044 866 ntBASIC2.2□□□□□ -2.06
HMGB3O15347 SUMO1P4-201ENST00000429430 302 ntBASIC2.2□□□□□ -2.06
HMGB3O15347 AC091286.1-201ENST00000431233 461 ntBASIC2.2□□□□□ -2.06
HMGB3O15347 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC2.2□□□□□ -2.06
HMGB3O15347 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.2□□□□□ -2.06
HMGB3O15347 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.2□□□□□ -2.06
HMGB3O15347 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC2.2□□□□□ -2.06
HMGB3O15347 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.2□□□□□ -2.06
HMGB3O15347 PRDX3P3-201ENST00000447765 522 ntBASIC2.2□□□□□ -2.06
HMGB3O15347 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC2.2□□□□□ -2.06
HMGB3O15347 AC083906.5-201ENST00000503722 328 ntBASIC2.2□□□□□ -2.06
HMGB3O15347 RNA5SP367-201ENST00000516557 118 ntBASIC2.2□□□□□ -2.06
HMGB3O15347 AC104997.1-201ENST00000519761 717 ntBASIC2.2□□□□□ -2.06
HMGB3O15347 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC2.2□□□□□ -2.06
HMGB3O15347 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.2□□□□□ -2.06
HMGB3O15347 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC2.2□□□□□ -2.06
HMGB3O15347 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC2.2□□□□□ -2.06
HMGB3O15347 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC2.2□□□□□ -2.06
HMGB3O15347 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.2□□□□□ -2.06
HMGB3O15347 AC017100.2-201ENST00000584628 355 ntBASIC2.2□□□□□ -2.06
HMGB3O15347 ZNF861P-201ENST00000588126 639 ntBASIC2.2□□□□□ -2.06
HMGB3O15347 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC2.2□□□□□ -2.06
HMGB3O15347 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.2□□□□□ -2.06
HMGB3O15347 AC068724.3-201ENST00000625906 87 ntBASIC2.2□□□□□ -2.06
HMGB3O15347 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC2.2□□□□□ -2.06
HMGB3O15347 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC2.2□□□□□ -2.06
HMGB3O15347 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.2□□□□□ -2.06
HMGB3O15347 AC119674.1-220ENST00000641502 1048 ntBASIC2.2□□□□□ -2.06
HMGB3O15347 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
HMGB3O15347 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
HMGB3O15347 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.19□□□□□ -2.06
HMGB3O15347 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
HMGB3O15347 SNORD114-30-201ENST00000364448 72 ntBASIC2.19□□□□□ -2.06
HMGB3O15347 RNA5SP37-201ENST00000365420 130 ntBASIC2.19□□□□□ -2.06
HMGB3O15347 RNU6-152P-201ENST00000384037 107 ntBASIC2.19□□□□□ -2.06
HMGB3O15347 RNU1-138P-201ENST00000384093 164 ntBASIC2.19□□□□□ -2.06
HMGB3O15347 SNORA51.12-201ENST00000384448 134 ntBASIC2.19□□□□□ -2.06
HMGB3O15347 MIR142-201ENST00000384835 87 ntBASIC2.19□□□□□ -2.06
HMGB3O15347 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
HMGB3O15347 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC2.19□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms