Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PCDHGA1Q9Y5H4 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PCDHGA1Q9Y5H4 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PCDHGA1Q9Y5H4 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
PCDHGA1Q9Y5H4 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
PCDHGA1Q9Y5H4 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
PCDHGA1Q9Y5H4 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PCDHGA1Q9Y5H4 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PCDHGA1Q9Y5H4 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PCDHGA1Q9Y5H4 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC18.43■□□□□ 0.54
PCDHGA1Q9Y5H4 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
PCDHGA1Q9Y5H4 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.43■□□□□ 0.54
PCDHGA1Q9Y5H4 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
PCDHGA1Q9Y5H4 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.43■□□□□ 0.54
PCDHGA1Q9Y5H4 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.43■□□□□ 0.54
PCDHGA1Q9Y5H4 SDHD-206ENST00000528182 754 ntTSL 3 BASIC18.43■□□□□ 0.54
PCDHGA1Q9Y5H4 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC18.43■□□□□ 0.54
PCDHGA1Q9Y5H4 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC18.43■□□□□ 0.54
PCDHGA1Q9Y5H4 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
PCDHGA1Q9Y5H4 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
PCDHGA1Q9Y5H4 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PCDHGA1Q9Y5H4 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PCDHGA1Q9Y5H4 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
PCDHGA1Q9Y5H4 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
PCDHGA1Q9Y5H4 FEM1AP1-201ENST00000431297 1995 ntBASIC18.42■□□□□ 0.54
PCDHGA1Q9Y5H4 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PCDHGA1Q9Y5H4 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC18.42■□□□□ 0.54
PCDHGA1Q9Y5H4 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC18.42■□□□□ 0.54
PCDHGA1Q9Y5H4 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PCDHGA1Q9Y5H4 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.42■□□□□ 0.54
PCDHGA1Q9Y5H4 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC18.42■□□□□ 0.54
PCDHGA1Q9Y5H4 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PCDHGA1Q9Y5H4 AL645929.1-201ENST00000420084 975 ntBASIC18.42■□□□□ 0.54
PCDHGA1Q9Y5H4 SPDYE13P-201ENST00000445314 798 ntBASIC18.42■□□□□ 0.54
PCDHGA1Q9Y5H4 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.42■□□□□ 0.54
PCDHGA1Q9Y5H4 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC18.42■□□□□ 0.54
PCDHGA1Q9Y5H4 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.42■□□□□ 0.54
PCDHGA1Q9Y5H4 PRELID1P1-202ENST00000567272 903 ntBASIC18.42■□□□□ 0.54
PCDHGA1Q9Y5H4 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.42■□□□□ 0.54
PCDHGA1Q9Y5H4 AC092329.2-201ENST00000598402 547 ntBASIC18.42■□□□□ 0.54
PCDHGA1Q9Y5H4 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.42■□□□□ 0.54
PCDHGA1Q9Y5H4 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC18.42■□□□□ 0.54
PCDHGA1Q9Y5H4 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
PCDHGA1Q9Y5H4 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PCDHGA1Q9Y5H4 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
PCDHGA1Q9Y5H4 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC18.42■□□□□ 0.54
PCDHGA1Q9Y5H4 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
PCDHGA1Q9Y5H4 PALM-208ENST00000592155 2272 ntTSL 4 BASIC18.42■□□□□ 0.54
PCDHGA1Q9Y5H4 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
PCDHGA1Q9Y5H4 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCDHGA1Q9Y5H4 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCDHGA1Q9Y5H4 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCDHGA1Q9Y5H4 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCDHGA1Q9Y5H4 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PCDHGA1Q9Y5H4 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCDHGA1Q9Y5H4 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.41■□□□□ 0.54
PCDHGA1Q9Y5H4 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCDHGA1Q9Y5H4 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCDHGA1Q9Y5H4 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC18.41■□□□□ 0.54
PCDHGA1Q9Y5H4 AC111152.3-201ENST00000569699 673 ntBASIC18.41■□□□□ 0.54
PCDHGA1Q9Y5H4 AC092119.3-201ENST00000612618 583 ntBASIC18.41■□□□□ 0.54
PCDHGA1Q9Y5H4 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
PCDHGA1Q9Y5H4 AF106564.1-201ENST00000607058 2553 ntBASIC18.41■□□□□ 0.54
PCDHGA1Q9Y5H4 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCDHGA1Q9Y5H4 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC18.41■□□□□ 0.54
PCDHGA1Q9Y5H4 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCDHGA1Q9Y5H4 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.41■□□□□ 0.54
PCDHGA1Q9Y5H4 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PCDHGA1Q9Y5H4 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.41■□□□□ 0.54
PCDHGA1Q9Y5H4 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCDHGA1Q9Y5H4 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.41■□□□□ 0.54
PCDHGA1Q9Y5H4 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
PCDHGA1Q9Y5H4 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
PCDHGA1Q9Y5H4 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC18.4■□□□□ 0.54
PCDHGA1Q9Y5H4 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCDHGA1Q9Y5H4 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.4■□□□□ 0.54
PCDHGA1Q9Y5H4 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PCDHGA1Q9Y5H4 AC004870.1-201ENST00000315132 882 ntBASIC18.4■□□□□ 0.54
PCDHGA1Q9Y5H4 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC18.4■□□□□ 0.54
PCDHGA1Q9Y5H4 TSPY21P-201ENST00000433481 731 ntBASIC18.4■□□□□ 0.54
PCDHGA1Q9Y5H4 TSPY23P-201ENST00000440136 739 ntBASIC18.4■□□□□ 0.54
PCDHGA1Q9Y5H4 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC18.4■□□□□ 0.54
PCDHGA1Q9Y5H4 FAAHP1-202ENST00000446499 1238 ntBASIC18.4■□□□□ 0.54
PCDHGA1Q9Y5H4 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC18.4■□□□□ 0.54
PCDHGA1Q9Y5H4 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC18.4■□□□□ 0.54
PCDHGA1Q9Y5H4 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.4■□□□□ 0.54
PCDHGA1Q9Y5H4 RN7SL510P-201ENST00000581311 263 ntBASIC18.4■□□□□ 0.54
PCDHGA1Q9Y5H4 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC18.4■□□□□ 0.54
PCDHGA1Q9Y5H4 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCDHGA1Q9Y5H4 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
PCDHGA1Q9Y5H4 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCDHGA1Q9Y5H4 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCDHGA1Q9Y5H4 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC18.4■□□□□ 0.54
PCDHGA1Q9Y5H4 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
PCDHGA1Q9Y5H4 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
PCDHGA1Q9Y5H4 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDHGA1Q9Y5H4 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.39■□□□□ 0.53
PCDHGA1Q9Y5H4 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDHGA1Q9Y5H4 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC18.39■□□□□ 0.53
PCDHGA1Q9Y5H4 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms