Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
LHX3Q9UBR4 CYGB-204ENST00000589342 815 ntTSL 3 BASIC19.36■□□□□ 0.69
LHX3Q9UBR4 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC19.36■□□□□ 0.69
LHX3Q9UBR4 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LHX3Q9UBR4 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
LHX3Q9UBR4 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LHX3Q9UBR4 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LHX3Q9UBR4 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC19.36■□□□□ 0.69
LHX3Q9UBR4 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LHX3Q9UBR4 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LHX3Q9UBR4 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.35■□□□□ 0.69
LHX3Q9UBR4 AC005332.7-201ENST00000614046 2005 ntBASIC19.35■□□□□ 0.69
LHX3Q9UBR4 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LHX3Q9UBR4 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
LHX3Q9UBR4 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.35■□□□□ 0.69
LHX3Q9UBR4 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
LHX3Q9UBR4 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC19.35■□□□□ 0.69
LHX3Q9UBR4 AC141586.3-201ENST00000562166 1838 ntBASIC19.35■□□□□ 0.69
LHX3Q9UBR4 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LHX3Q9UBR4 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC19.35■□□□□ 0.69
LHX3Q9UBR4 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC19.35■□□□□ 0.69
LHX3Q9UBR4 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC19.35■□□□□ 0.69
LHX3Q9UBR4 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
LHX3Q9UBR4 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.35■□□□□ 0.69
LHX3Q9UBR4 ARL16-211ENST00000576135 694 ntTSL 3 BASIC19.35■□□□□ 0.69
LHX3Q9UBR4 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
LHX3Q9UBR4 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
LHX3Q9UBR4 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LHX3Q9UBR4 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LHX3Q9UBR4 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
LHX3Q9UBR4 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.34■□□□□ 0.69
LHX3Q9UBR4 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
LHX3Q9UBR4 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC19.34■□□□□ 0.69
LHX3Q9UBR4 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.34■□□□□ 0.69
LHX3Q9UBR4 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
LHX3Q9UBR4 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LHX3Q9UBR4 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
LHX3Q9UBR4 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC19.34■□□□□ 0.69
LHX3Q9UBR4 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LHX3Q9UBR4 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LHX3Q9UBR4 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LHX3Q9UBR4 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.34■□□□□ 0.69
LHX3Q9UBR4 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC19.34■□□□□ 0.69
LHX3Q9UBR4 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC19.34■□□□□ 0.69
LHX3Q9UBR4 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
LHX3Q9UBR4 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LHX3Q9UBR4 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.34■□□□□ 0.69
LHX3Q9UBR4 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LHX3Q9UBR4 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
LHX3Q9UBR4 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
LHX3Q9UBR4 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LHX3Q9UBR4 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.34■□□□□ 0.69
LHX3Q9UBR4 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.34■□□□□ 0.69
LHX3Q9UBR4 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LHX3Q9UBR4 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LHX3Q9UBR4 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
LHX3Q9UBR4 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
LHX3Q9UBR4 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.33■□□□□ 0.69
LHX3Q9UBR4 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC19.33■□□□□ 0.69
LHX3Q9UBR4 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC19.33■□□□□ 0.69
LHX3Q9UBR4 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC19.33■□□□□ 0.69
LHX3Q9UBR4 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC19.33■□□□□ 0.69
LHX3Q9UBR4 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC19.33■□□□□ 0.69
LHX3Q9UBR4 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
LHX3Q9UBR4 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LHX3Q9UBR4 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LHX3Q9UBR4 AC211429.1-201ENST00000415277 523 ntBASIC19.33■□□□□ 0.68
LHX3Q9UBR4 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC19.33■□□□□ 0.68
LHX3Q9UBR4 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LHX3Q9UBR4 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC19.33■□□□□ 0.68
LHX3Q9UBR4 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC19.33■□□□□ 0.68
LHX3Q9UBR4 NAPSB-206ENST00000562112 1266 ntBASIC19.33■□□□□ 0.68
LHX3Q9UBR4 AC012306.2-201ENST00000609350 630 ntBASIC19.33■□□□□ 0.68
LHX3Q9UBR4 AC133561.5-201ENST00000635547 218 ntBASIC19.33■□□□□ 0.68
LHX3Q9UBR4 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LHX3Q9UBR4 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LHX3Q9UBR4 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.33■□□□□ 0.68
LHX3Q9UBR4 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
LHX3Q9UBR4 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LHX3Q9UBR4 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
LHX3Q9UBR4 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LHX3Q9UBR4 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
LHX3Q9UBR4 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
LHX3Q9UBR4 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LHX3Q9UBR4 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19.33■□□□□ 0.68
LHX3Q9UBR4 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
LHX3Q9UBR4 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.33■□□□□ 0.68
LHX3Q9UBR4 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC19.32■□□□□ 0.68
LHX3Q9UBR4 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LHX3Q9UBR4 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LHX3Q9UBR4 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LHX3Q9UBR4 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
LHX3Q9UBR4 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC19.32■□□□□ 0.68
LHX3Q9UBR4 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LHX3Q9UBR4 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LHX3Q9UBR4 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LHX3Q9UBR4 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.32■□□□□ 0.68
LHX3Q9UBR4 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC19.32■□□□□ 0.68
LHX3Q9UBR4 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC19.32■□□□□ 0.68
LHX3Q9UBR4 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms