Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC21.02■□□□□ 0.96
TRAIPQ9BWF2 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
TRAIPQ9BWF2 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAIPQ9BWF2 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAIPQ9BWF2 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC21.02■□□□□ 0.95
TRAIPQ9BWF2 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC21.01■□□□□ 0.95
TRAIPQ9BWF2 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRAIPQ9BWF2 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC21.01■□□□□ 0.95
TRAIPQ9BWF2 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC21.01■□□□□ 0.95
TRAIPQ9BWF2 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRAIPQ9BWF2 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRAIPQ9BWF2 HIST1H2APS4-201ENST00000362070 348 ntBASIC21.01■□□□□ 0.95
TRAIPQ9BWF2 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC21.01■□□□□ 0.95
TRAIPQ9BWF2 AC007663.1-201ENST00000438948 1240 ntBASIC21.01■□□□□ 0.95
TRAIPQ9BWF2 TSPY17P-201ENST00000450329 467 ntBASIC21.01■□□□□ 0.95
TRAIPQ9BWF2 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC21.01■□□□□ 0.95
TRAIPQ9BWF2 NT5C-211ENST00000582170 653 ntTSL 3 BASIC21.01■□□□□ 0.95
TRAIPQ9BWF2 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC21.01■□□□□ 0.95
TRAIPQ9BWF2 AC006011.2-201ENST00000621313 1158 ntBASIC21.01■□□□□ 0.95
TRAIPQ9BWF2 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRAIPQ9BWF2 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRAIPQ9BWF2 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRAIPQ9BWF2 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC21.01■□□□□ 0.95
TRAIPQ9BWF2 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
TRAIPQ9BWF2 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC21.01■□□□□ 0.95
TRAIPQ9BWF2 TCF3P1-201ENST00000423021 1937 ntBASIC21■□□□□ 0.95
TRAIPQ9BWF2 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRAIPQ9BWF2 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
TRAIPQ9BWF2 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
TRAIPQ9BWF2 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC21■□□□□ 0.95
TRAIPQ9BWF2 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC21■□□□□ 0.95
TRAIPQ9BWF2 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
TRAIPQ9BWF2 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
TRAIPQ9BWF2 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
TRAIPQ9BWF2 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC21■□□□□ 0.95
TRAIPQ9BWF2 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
TRAIPQ9BWF2 BX664615.1-201ENST00000443558 458 ntBASIC21■□□□□ 0.95
TRAIPQ9BWF2 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
TRAIPQ9BWF2 TPM1-226ENST00000560959 925 ntTSL 2 BASIC21■□□□□ 0.95
TRAIPQ9BWF2 CKBP1-201ENST00000565489 1086 ntBASIC21■□□□□ 0.95
TRAIPQ9BWF2 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
TRAIPQ9BWF2 AL138966.2-201ENST00000621997 464 ntBASIC21■□□□□ 0.95
TRAIPQ9BWF2 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC21■□□□□ 0.95
TRAIPQ9BWF2 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
TRAIPQ9BWF2 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC21■□□□□ 0.95
TRAIPQ9BWF2 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC21■□□□□ 0.95
TRAIPQ9BWF2 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC21■□□□□ 0.95
TRAIPQ9BWF2 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC21■□□□□ 0.95
TRAIPQ9BWF2 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC21■□□□□ 0.95
TRAIPQ9BWF2 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
TRAIPQ9BWF2 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC21■□□□□ 0.95
TRAIPQ9BWF2 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRAIPQ9BWF2 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC21■□□□□ 0.95
TRAIPQ9BWF2 ANKRD18DP-204ENST00000455355 1975 ntBASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 ATP5G1P1-201ENST00000448724 379 ntBASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 AL353719.1-201ENST00000566847 864 ntBASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TRAIPQ9BWF2 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.98■□□□□ 0.95
TRAIPQ9BWF2 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
TRAIPQ9BWF2 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRAIPQ9BWF2 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRAIPQ9BWF2 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRAIPQ9BWF2 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.98■□□□□ 0.95
TRAIPQ9BWF2 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.98■□□□□ 0.95
TRAIPQ9BWF2 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRAIPQ9BWF2 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRAIPQ9BWF2 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRAIPQ9BWF2 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC20.98■□□□□ 0.95
TRAIPQ9BWF2 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TRAIPQ9BWF2 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
TRAIPQ9BWF2 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms