Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
HERPUD2Q9BSE4 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC19.9■□□□□ 0.78
HERPUD2Q9BSE4 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
HERPUD2Q9BSE4 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HERPUD2Q9BSE4 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HERPUD2Q9BSE4 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
HERPUD2Q9BSE4 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.9■□□□□ 0.78
HERPUD2Q9BSE4 AC007613.1-201ENST00000572811 2597 ntBASIC19.9■□□□□ 0.78
HERPUD2Q9BSE4 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
HERPUD2Q9BSE4 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
HERPUD2Q9BSE4 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
HERPUD2Q9BSE4 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
HERPUD2Q9BSE4 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HERPUD2Q9BSE4 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HERPUD2Q9BSE4 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HERPUD2Q9BSE4 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
HERPUD2Q9BSE4 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC19.89■□□□□ 0.77
HERPUD2Q9BSE4 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HERPUD2Q9BSE4 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.89■□□□□ 0.77
HERPUD2Q9BSE4 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC19.89■□□□□ 0.77
HERPUD2Q9BSE4 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.89■□□□□ 0.77
HERPUD2Q9BSE4 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
HERPUD2Q9BSE4 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HERPUD2Q9BSE4 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HERPUD2Q9BSE4 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC19.89■□□□□ 0.77
HERPUD2Q9BSE4 HLA-A-209ENST00000638375 975 ntBASIC19.89■□□□□ 0.77
HERPUD2Q9BSE4 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HERPUD2Q9BSE4 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HERPUD2Q9BSE4 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HERPUD2Q9BSE4 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.88■□□□□ 0.77
HERPUD2Q9BSE4 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HERPUD2Q9BSE4 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HERPUD2Q9BSE4 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.88■□□□□ 0.77
HERPUD2Q9BSE4 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
HERPUD2Q9BSE4 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.88■□□□□ 0.77
HERPUD2Q9BSE4 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.88■□□□□ 0.77
HERPUD2Q9BSE4 FEM1AP3-201ENST00000403722 1741 ntBASIC19.88■□□□□ 0.77
HERPUD2Q9BSE4 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HERPUD2Q9BSE4 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HERPUD2Q9BSE4 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HERPUD2Q9BSE4 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC19.88■□□□□ 0.77
HERPUD2Q9BSE4 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HERPUD2Q9BSE4 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HERPUD2Q9BSE4 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HERPUD2Q9BSE4 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC19.88■□□□□ 0.77
HERPUD2Q9BSE4 ADM-205ENST00000528544 586 ntTSL 2 BASIC19.88■□□□□ 0.77
HERPUD2Q9BSE4 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HERPUD2Q9BSE4 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HERPUD2Q9BSE4 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.88■□□□□ 0.77
HERPUD2Q9BSE4 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HERPUD2Q9BSE4 WIZP1-201ENST00000531444 2299 ntBASIC19.88■□□□□ 0.77
HERPUD2Q9BSE4 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HERPUD2Q9BSE4 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HERPUD2Q9BSE4 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HERPUD2Q9BSE4 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC19.88■□□□□ 0.77
HERPUD2Q9BSE4 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC19.88■□□□□ 0.77
HERPUD2Q9BSE4 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
HERPUD2Q9BSE4 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC19.88■□□□□ 0.77
HERPUD2Q9BSE4 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC19.88■□□□□ 0.77
HERPUD2Q9BSE4 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HERPUD2Q9BSE4 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HERPUD2Q9BSE4 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC19.87■□□□□ 0.77
HERPUD2Q9BSE4 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HERPUD2Q9BSE4 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HERPUD2Q9BSE4 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HERPUD2Q9BSE4 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
HERPUD2Q9BSE4 KRT18P29-201ENST00000397031 1267 ntBASIC19.87■□□□□ 0.77
HERPUD2Q9BSE4 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HERPUD2Q9BSE4 AC026366.1-201ENST00000488803 879 ntBASIC19.87■□□□□ 0.77
HERPUD2Q9BSE4 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC19.87■□□□□ 0.77
HERPUD2Q9BSE4 AP003097.1-201ENST00000530657 1135 ntBASIC19.87■□□□□ 0.77
HERPUD2Q9BSE4 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HERPUD2Q9BSE4 MMAB-206ENST00000540016 945 ntTSL 3 BASIC19.87■□□□□ 0.77
HERPUD2Q9BSE4 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HERPUD2Q9BSE4 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HERPUD2Q9BSE4 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HERPUD2Q9BSE4 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HERPUD2Q9BSE4 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HERPUD2Q9BSE4 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC19.87■□□□□ 0.77
HERPUD2Q9BSE4 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.87■□□□□ 0.77
HERPUD2Q9BSE4 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
HERPUD2Q9BSE4 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HERPUD2Q9BSE4 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HERPUD2Q9BSE4 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
HERPUD2Q9BSE4 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HERPUD2Q9BSE4 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HERPUD2Q9BSE4 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC19.86■□□□□ 0.77
HERPUD2Q9BSE4 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
HERPUD2Q9BSE4 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC19.86■□□□□ 0.77
HERPUD2Q9BSE4 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
HERPUD2Q9BSE4 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HERPUD2Q9BSE4 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
HERPUD2Q9BSE4 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HERPUD2Q9BSE4 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
HERPUD2Q9BSE4 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HERPUD2Q9BSE4 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC19.86■□□□□ 0.77
HERPUD2Q9BSE4 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
HERPUD2Q9BSE4 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HERPUD2Q9BSE4 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC19.86■□□□□ 0.77
HERPUD2Q9BSE4 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms