Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SNRNP40Q96DI7 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.26■□□□□ 0.35
SNRNP40Q96DI7 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
SNRNP40Q96DI7 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
SNRNP40Q96DI7 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SNRNP40Q96DI7 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SNRNP40Q96DI7 HBZP1-201ENST00000354915 429 ntBASIC17.26■□□□□ 0.35
SNRNP40Q96DI7 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SNRNP40Q96DI7 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SNRNP40Q96DI7 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SNRNP40Q96DI7 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SNRNP40Q96DI7 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC17.26■□□□□ 0.35
SNRNP40Q96DI7 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.26■□□□□ 0.35
SNRNP40Q96DI7 MIR3652-201ENST00000579335 131 ntBASIC17.26■□□□□ 0.35
SNRNP40Q96DI7 MIR4674-201ENST00000582457 87 ntBASIC17.26■□□□□ 0.35
SNRNP40Q96DI7 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SNRNP40Q96DI7 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
SNRNP40Q96DI7 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC17.26■□□□□ 0.35
SNRNP40Q96DI7 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SNRNP40Q96DI7 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SNRNP40Q96DI7 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SNRNP40Q96DI7 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SNRNP40Q96DI7 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.26■□□□□ 0.35
SNRNP40Q96DI7 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC17.25■□□□□ 0.35
SNRNP40Q96DI7 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC17.25■□□□□ 0.35
SNRNP40Q96DI7 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SNRNP40Q96DI7 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SNRNP40Q96DI7 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SNRNP40Q96DI7 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
SNRNP40Q96DI7 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SNRNP40Q96DI7 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
SNRNP40Q96DI7 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
SNRNP40Q96DI7 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SNRNP40Q96DI7 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SNRNP40Q96DI7 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SNRNP40Q96DI7 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
SNRNP40Q96DI7 AL645929.1-201ENST00000420084 975 ntBASIC17.25■□□□□ 0.35
SNRNP40Q96DI7 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17.25■□□□□ 0.35
SNRNP40Q96DI7 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.25■□□□□ 0.35
SNRNP40Q96DI7 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.25■□□□□ 0.35
SNRNP40Q96DI7 PRR29-207ENST00000580752 458 ntTSL 3 BASIC17.25■□□□□ 0.35
SNRNP40Q96DI7 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
SNRNP40Q96DI7 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
SNRNP40Q96DI7 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SNRNP40Q96DI7 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
SNRNP40Q96DI7 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SNRNP40Q96DI7 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
SNRNP40Q96DI7 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SNRNP40Q96DI7 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SNRNP40Q96DI7 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
SNRNP40Q96DI7 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SNRNP40Q96DI7 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 ANKRD18DP-204ENST00000455355 1975 ntBASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 AC246785.2-201ENST00000432512 513 ntBASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 SDHD-206ENST00000528182 754 ntTSL 3 BASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 PRELID1P1-202ENST00000567272 903 ntBASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 AC092329.2-201ENST00000598402 547 ntBASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 CR769767.2-201ENST00000622735 460 ntBASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 TBC1D3P2-202ENST00000577902 1649 ntBASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
SNRNP40Q96DI7 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SNRNP40Q96DI7 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SNRNP40Q96DI7 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC17.23■□□□□ 0.35
SNRNP40Q96DI7 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC17.23■□□□□ 0.35
SNRNP40Q96DI7 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SNRNP40Q96DI7 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SNRNP40Q96DI7 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SNRNP40Q96DI7 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SNRNP40Q96DI7 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
SNRNP40Q96DI7 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SNRNP40Q96DI7 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SNRNP40Q96DI7 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SNRNP40Q96DI7 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SNRNP40Q96DI7 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SNRNP40Q96DI7 RN7SL510P-201ENST00000581311 263 ntBASIC17.23■□□□□ 0.35
SNRNP40Q96DI7 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms