Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC22.77■■□□□ 1.24
SMC1BQ8NDV3 RNF126P1-202ENST00000569893 925 ntBASIC22.77■■□□□ 1.24
SMC1BQ8NDV3 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
SMC1BQ8NDV3 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
SMC1BQ8NDV3 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
SMC1BQ8NDV3 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC22.77■■□□□ 1.24
SMC1BQ8NDV3 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC22.77■■□□□ 1.24
SMC1BQ8NDV3 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC22.77■■□□□ 1.24
SMC1BQ8NDV3 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC22.77■■□□□ 1.24
SMC1BQ8NDV3 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
SMC1BQ8NDV3 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC22.77■■□□□ 1.23
SMC1BQ8NDV3 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
SMC1BQ8NDV3 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
SMC1BQ8NDV3 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
SMC1BQ8NDV3 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
SMC1BQ8NDV3 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC22.76■■□□□ 1.23
SMC1BQ8NDV3 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
SMC1BQ8NDV3 MED22-202ENST00000371999 987 ntTSL 3 BASIC22.76■■□□□ 1.23
SMC1BQ8NDV3 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
SMC1BQ8NDV3 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC22.76■■□□□ 1.23
SMC1BQ8NDV3 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
SMC1BQ8NDV3 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC22.76■■□□□ 1.23
SMC1BQ8NDV3 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
SMC1BQ8NDV3 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC22.76■■□□□ 1.23
SMC1BQ8NDV3 PIN1-206ENST00000587625 878 ntTSL 2 BASIC22.76■■□□□ 1.23
SMC1BQ8NDV3 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC22.76■■□□□ 1.23
SMC1BQ8NDV3 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC22.76■■□□□ 1.23
SMC1BQ8NDV3 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC22.76■■□□□ 1.23
SMC1BQ8NDV3 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC22.76■■□□□ 1.23
SMC1BQ8NDV3 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC22.76■■□□□ 1.23
SMC1BQ8NDV3 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC22.76■■□□□ 1.23
SMC1BQ8NDV3 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC22.75■■□□□ 1.23
SMC1BQ8NDV3 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
SMC1BQ8NDV3 PKD1P6-201ENST00000343738 4769 ntBASIC22.75■■□□□ 1.23
SMC1BQ8NDV3 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
SMC1BQ8NDV3 KRT18P67-201ENST00000432816 1264 ntBASIC22.75■■□□□ 1.23
SMC1BQ8NDV3 AC098831.1-202ENST00000438821 336 ntBASIC22.75■■□□□ 1.23
SMC1BQ8NDV3 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC22.75■■□□□ 1.23
SMC1BQ8NDV3 FICD-205ENST00000552758 603 ntTSL 2 BASIC22.75■■□□□ 1.23
SMC1BQ8NDV3 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC22.75■■□□□ 1.23
SMC1BQ8NDV3 MIR3197-201ENST00000582241 73 ntBASIC22.75■■□□□ 1.23
SMC1BQ8NDV3 AC090616.6-201ENST00000582640 721 ntBASIC22.75■■□□□ 1.23
SMC1BQ8NDV3 AP001160.2-201ENST00000596071 487 ntBASIC22.75■■□□□ 1.23
SMC1BQ8NDV3 AL136038.4-201ENST00000603606 1261 ntBASIC22.75■■□□□ 1.23
SMC1BQ8NDV3 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC22.75■■□□□ 1.23
SMC1BQ8NDV3 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC22.75■■□□□ 1.23
SMC1BQ8NDV3 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC22.75■■□□□ 1.23
SMC1BQ8NDV3 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC22.75■■□□□ 1.23
SMC1BQ8NDV3 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC22.75■■□□□ 1.23
SMC1BQ8NDV3 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC22.75■■□□□ 1.23
SMC1BQ8NDV3 ZNF259P1-201ENST00000407656 1365 ntBASIC22.75■■□□□ 1.23
SMC1BQ8NDV3 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC22.75■■□□□ 1.23
SMC1BQ8NDV3 LINC01465-201ENST00000408887 1940 ntBASIC22.74■■□□□ 1.23
SMC1BQ8NDV3 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC22.74■■□□□ 1.23
SMC1BQ8NDV3 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
SMC1BQ8NDV3 KRT8P11-201ENST00000409686 1436 ntBASIC22.74■■□□□ 1.23
SMC1BQ8NDV3 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
SMC1BQ8NDV3 AC121338.2-201ENST00000622535 1744 ntBASIC22.74■■□□□ 1.23
SMC1BQ8NDV3 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC22.74■■□□□ 1.23
SMC1BQ8NDV3 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
SMC1BQ8NDV3 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
SMC1BQ8NDV3 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC22.74■■□□□ 1.23
SMC1BQ8NDV3 BAALC-202ENST00000306391 243 ntTSL 5 BASIC22.74■■□□□ 1.23
SMC1BQ8NDV3 BAALC-204ENST00000330955 222 ntTSL 5 BASIC22.74■■□□□ 1.23
SMC1BQ8NDV3 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
SMC1BQ8NDV3 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC22.74■■□□□ 1.23
SMC1BQ8NDV3 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC22.74■■□□□ 1.23
SMC1BQ8NDV3 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC22.74■■□□□ 1.23
SMC1BQ8NDV3 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC22.74■■□□□ 1.23
SMC1BQ8NDV3 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC22.74■■□□□ 1.23
SMC1BQ8NDV3 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC22.74■■□□□ 1.23
SMC1BQ8NDV3 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC22.74■■□□□ 1.23
SMC1BQ8NDV3 Z69720.1-201ENST00000601483 472 ntBASIC22.74■■□□□ 1.23
SMC1BQ8NDV3 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC22.74■■□□□ 1.23
SMC1BQ8NDV3 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
SMC1BQ8NDV3 AC233702.3-201ENST00000578656 1387 ntBASIC22.74■■□□□ 1.23
SMC1BQ8NDV3 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
SMC1BQ8NDV3 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
SMC1BQ8NDV3 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
SMC1BQ8NDV3 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC22.73■■□□□ 1.23
SMC1BQ8NDV3 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
SMC1BQ8NDV3 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
SMC1BQ8NDV3 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
SMC1BQ8NDV3 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
SMC1BQ8NDV3 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
SMC1BQ8NDV3 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC22.73■■□□□ 1.23
SMC1BQ8NDV3 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC22.73■■□□□ 1.23
SMC1BQ8NDV3 URGCP-206ENST00000446958 365 ntTSL 2 BASIC22.73■■□□□ 1.23
SMC1BQ8NDV3 AF186996.4-201ENST00000467186 377 ntBASIC22.73■■□□□ 1.23
SMC1BQ8NDV3 RPL13AP23-201ENST00000480739 586 ntBASIC22.73■■□□□ 1.23
SMC1BQ8NDV3 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC22.73■■□□□ 1.23
SMC1BQ8NDV3 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC22.73■■□□□ 1.23
SMC1BQ8NDV3 DPP3P2-201ENST00000416030 1696 ntBASIC22.73■■□□□ 1.23
SMC1BQ8NDV3 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
SMC1BQ8NDV3 CD37-204ENST00000535669 1674 ntTSL 2 BASIC22.73■■□□□ 1.23
SMC1BQ8NDV3 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
SMC1BQ8NDV3 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC22.73■■□□□ 1.23
SMC1BQ8NDV3 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
SMC1BQ8NDV3 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC22.73■■□□□ 1.23
SMC1BQ8NDV3 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms