Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
RC3H1Q5TC82 SEC1P-202ENST00000473944 940 ntBASIC24.22■■□□□ 1.47
RC3H1Q5TC82 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
RC3H1Q5TC82 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
RC3H1Q5TC82 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC24.22■■□□□ 1.47
RC3H1Q5TC82 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
RC3H1Q5TC82 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
RC3H1Q5TC82 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
RC3H1Q5TC82 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC24.21■■□□□ 1.47
RC3H1Q5TC82 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC24.21■■□□□ 1.47
RC3H1Q5TC82 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC24.21■■□□□ 1.47
RC3H1Q5TC82 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
RC3H1Q5TC82 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC24.21■■□□□ 1.47
RC3H1Q5TC82 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
RC3H1Q5TC82 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
RC3H1Q5TC82 AP000347.1-202ENST00000435868 847 ntBASIC24.21■■□□□ 1.47
RC3H1Q5TC82 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC24.21■■□□□ 1.47
RC3H1Q5TC82 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC24.21■■□□□ 1.47
RC3H1Q5TC82 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC24.21■■□□□ 1.47
RC3H1Q5TC82 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC24.21■■□□□ 1.47
RC3H1Q5TC82 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC24.21■■□□□ 1.47
RC3H1Q5TC82 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC24.21■■□□□ 1.47
RC3H1Q5TC82 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
RC3H1Q5TC82 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
RC3H1Q5TC82 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC24.2■■□□□ 1.47
RC3H1Q5TC82 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
RC3H1Q5TC82 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.47
RC3H1Q5TC82 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC24.2■■□□□ 1.46
RC3H1Q5TC82 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
RC3H1Q5TC82 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC24.2■■□□□ 1.46
RC3H1Q5TC82 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC24.2■■□□□ 1.46
RC3H1Q5TC82 MIR662-201ENST00000384847 95 ntBASIC24.2■■□□□ 1.46
RC3H1Q5TC82 CHCHD2P8-201ENST00000429873 447 ntBASIC24.2■■□□□ 1.46
RC3H1Q5TC82 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
RC3H1Q5TC82 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC24.2■■□□□ 1.46
RC3H1Q5TC82 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC24.2■■□□□ 1.46
RC3H1Q5TC82 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC24.2■■□□□ 1.46
RC3H1Q5TC82 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC24.2■■□□□ 1.46
RC3H1Q5TC82 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC24.2■■□□□ 1.46
RC3H1Q5TC82 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
RC3H1Q5TC82 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
RC3H1Q5TC82 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC24.2■■□□□ 1.46
RC3H1Q5TC82 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC24.19■■□□□ 1.46
RC3H1Q5TC82 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC24.19■■□□□ 1.46
RC3H1Q5TC82 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC24.19■■□□□ 1.46
RC3H1Q5TC82 AL162377.1-201ENST00000618844 1793 ntBASIC24.19■■□□□ 1.46
RC3H1Q5TC82 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC24.19■■□□□ 1.46
RC3H1Q5TC82 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC24.19■■□□□ 1.46
RC3H1Q5TC82 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
RC3H1Q5TC82 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC24.19■■□□□ 1.46
RC3H1Q5TC82 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC24.19■■□□□ 1.46
RC3H1Q5TC82 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC24.19■■□□□ 1.46
RC3H1Q5TC82 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC24.19■■□□□ 1.46
RC3H1Q5TC82 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC24.19■■□□□ 1.46
RC3H1Q5TC82 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC24.19■■□□□ 1.46
RC3H1Q5TC82 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC24.19■■□□□ 1.46
RC3H1Q5TC82 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC24.19■■□□□ 1.46
RC3H1Q5TC82 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC24.19■■□□□ 1.46
RC3H1Q5TC82 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC24.19■■□□□ 1.46
RC3H1Q5TC82 LINC00565-201ENST00000562710 2331 ntBASIC24.19■■□□□ 1.46
RC3H1Q5TC82 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC24.19■■□□□ 1.46
RC3H1Q5TC82 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC24.19■■□□□ 1.46
RC3H1Q5TC82 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
RC3H1Q5TC82 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
RC3H1Q5TC82 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC24.19■■□□□ 1.46
RC3H1Q5TC82 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC24.19■■□□□ 1.46
RC3H1Q5TC82 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
RC3H1Q5TC82 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
RC3H1Q5TC82 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC24.18■■□□□ 1.46
RC3H1Q5TC82 ZNF815P-204ENST00000434898 1737 ntBASIC24.18■■□□□ 1.46
RC3H1Q5TC82 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC24.18■■□□□ 1.46
RC3H1Q5TC82 AC036111.1-201ENST00000533973 1582 ntBASIC24.18■■□□□ 1.46
RC3H1Q5TC82 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
RC3H1Q5TC82 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC24.18■■□□□ 1.46
RC3H1Q5TC82 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC24.18■■□□□ 1.46
RC3H1Q5TC82 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC24.18■■□□□ 1.46
RC3H1Q5TC82 TSPY19P-201ENST00000418461 509 ntBASIC24.18■■□□□ 1.46
RC3H1Q5TC82 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC24.18■■□□□ 1.46
RC3H1Q5TC82 GRAMD4P1-201ENST00000435181 1110 ntBASIC24.18■■□□□ 1.46
RC3H1Q5TC82 TSPY18P-201ENST00000441642 509 ntBASIC24.18■■□□□ 1.46
RC3H1Q5TC82 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.46
RC3H1Q5TC82 MIR3180-5-201ENST00000583743 153 ntBASIC24.18■■□□□ 1.46
RC3H1Q5TC82 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
RC3H1Q5TC82 SPEG-225ENST00000617028 815 ntTSL 5 BASIC24.18■■□□□ 1.46
RC3H1Q5TC82 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
RC3H1Q5TC82 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC24.17■■□□□ 1.46
RC3H1Q5TC82 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
RC3H1Q5TC82 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
RC3H1Q5TC82 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
RC3H1Q5TC82 AL512408.1-201ENST00000569378 2000 ntBASIC24.17■■□□□ 1.46
RC3H1Q5TC82 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
RC3H1Q5TC82 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC24.17■■□□□ 1.46
RC3H1Q5TC82 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
RC3H1Q5TC82 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC24.17■■□□□ 1.46
RC3H1Q5TC82 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
RC3H1Q5TC82 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC24.17■■□□□ 1.46
RC3H1Q5TC82 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC24.17■■□□□ 1.46
RC3H1Q5TC82 IL11-204ENST00000590625 1028 ntTSL 2 BASIC24.17■■□□□ 1.46
RC3H1Q5TC82 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC24.17■■□□□ 1.46
RC3H1Q5TC82 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC24.17■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms