Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.59■□□□□ 0.57
FOXA1P55317 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
FOXA1P55317 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
FOXA1P55317 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
FOXA1P55317 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
FOXA1P55317 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
FOXA1P55317 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
FOXA1P55317 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
FOXA1P55317 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
FOXA1P55317 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
FOXA1P55317 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
FOXA1P55317 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.59■□□□□ 0.57
FOXA1P55317 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
FOXA1P55317 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
FOXA1P55317 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
FOXA1P55317 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
FOXA1P55317 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.59■□□□□ 0.57
FOXA1P55317 AC104771.1-201ENST00000603335 964 ntBASIC18.59■□□□□ 0.57
FOXA1P55317 AC133041.1-202ENST00000642053 222 ntBASIC18.59■□□□□ 0.57
FOXA1P55317 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.59■□□□□ 0.57
FOXA1P55317 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.59■□□□□ 0.57
FOXA1P55317 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.59■□□□□ 0.57
FOXA1P55317 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
FOXA1P55317 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
FOXA1P55317 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
FOXA1P55317 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
FOXA1P55317 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
FOXA1P55317 AL512353.2-201ENST00000448759 1962 ntBASIC18.59■□□□□ 0.57
FOXA1P55317 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
FOXA1P55317 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
FOXA1P55317 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
FOXA1P55317 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
FOXA1P55317 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.58■□□□□ 0.57
FOXA1P55317 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
FOXA1P55317 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.58■□□□□ 0.57
FOXA1P55317 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
FOXA1P55317 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
FOXA1P55317 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
FOXA1P55317 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
FOXA1P55317 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
FOXA1P55317 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC18.58■□□□□ 0.56
FOXA1P55317 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
FOXA1P55317 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
FOXA1P55317 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.58■□□□□ 0.56
FOXA1P55317 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
FOXA1P55317 AC142086.2-201ENST00000569753 217 ntBASIC18.58■□□□□ 0.56
FOXA1P55317 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC18.58■□□□□ 0.56
FOXA1P55317 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
FOXA1P55317 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.56
FOXA1P55317 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
FOXA1P55317 AC093525.10-201ENST00000625130 1569 ntBASIC18.58■□□□□ 0.56
FOXA1P55317 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
FOXA1P55317 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
FOXA1P55317 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.58■□□□□ 0.56
FOXA1P55317 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
FOXA1P55317 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
FOXA1P55317 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.58■□□□□ 0.56
FOXA1P55317 FEM1AP3-201ENST00000403722 1741 ntBASIC18.57■□□□□ 0.56
FOXA1P55317 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
FOXA1P55317 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
FOXA1P55317 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
FOXA1P55317 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.57■□□□□ 0.56
FOXA1P55317 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
FOXA1P55317 UNC93B4-201ENST00000505679 747 ntBASIC18.57■□□□□ 0.56
FOXA1P55317 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.57■□□□□ 0.56
FOXA1P55317 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.57■□□□□ 0.56
FOXA1P55317 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
FOXA1P55317 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
FOXA1P55317 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
FOXA1P55317 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.57■□□□□ 0.56
FOXA1P55317 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.57■□□□□ 0.56
FOXA1P55317 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.57■□□□□ 0.56
FOXA1P55317 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.57■□□□□ 0.56
FOXA1P55317 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
FOXA1P55317 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
FOXA1P55317 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
FOXA1P55317 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
FOXA1P55317 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
FOXA1P55317 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
FOXA1P55317 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
FOXA1P55317 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.56■□□□□ 0.56
FOXA1P55317 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
FOXA1P55317 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
FOXA1P55317 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
FOXA1P55317 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
FOXA1P55317 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
FOXA1P55317 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
FOXA1P55317 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.56■□□□□ 0.56
FOXA1P55317 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC18.56■□□□□ 0.56
FOXA1P55317 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
FOXA1P55317 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
FOXA1P55317 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.56■□□□□ 0.56
FOXA1P55317 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
FOXA1P55317 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
FOXA1P55317 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
FOXA1P55317 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
FOXA1P55317 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
FOXA1P55317 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
FOXA1P55317 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.56■□□□□ 0.56
FOXA1P55317 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms