Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC17.3■□□□□ 0.36
COL6A6A6NMZ7 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
COL6A6A6NMZ7 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC17.3■□□□□ 0.36
COL6A6A6NMZ7 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
COL6A6A6NMZ7 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
COL6A6A6NMZ7 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
COL6A6A6NMZ7 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A6A6NMZ7 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A6A6NMZ7 PKD1P6-201ENST00000343738 4769 ntBASIC17.3■□□□□ 0.36
COL6A6A6NMZ7 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A6A6NMZ7 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A6A6NMZ7 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A6A6NMZ7 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A6A6NMZ7 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
COL6A6A6NMZ7 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A6A6NMZ7 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC17.3■□□□□ 0.36
COL6A6A6NMZ7 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC17.3■□□□□ 0.36
COL6A6A6NMZ7 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A6A6NMZ7 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.29■□□□□ 0.36
COL6A6A6NMZ7 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC17.29■□□□□ 0.36
COL6A6A6NMZ7 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A6A6NMZ7 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A6A6NMZ7 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
COL6A6A6NMZ7 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A6A6NMZ7 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A6A6NMZ7 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A6A6NMZ7 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
COL6A6A6NMZ7 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A6A6NMZ7 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A6A6NMZ7 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.29■□□□□ 0.36
COL6A6A6NMZ7 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.29■□□□□ 0.36
COL6A6A6NMZ7 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC17.29■□□□□ 0.36
COL6A6A6NMZ7 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.29■□□□□ 0.36
COL6A6A6NMZ7 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A6A6NMZ7 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.29■□□□□ 0.36
COL6A6A6NMZ7 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A6A6NMZ7 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A6A6NMZ7 AKR1C7P-201ENST00000305623 895 ntBASIC17.28■□□□□ 0.36
COL6A6A6NMZ7 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A6A6NMZ7 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC17.28■□□□□ 0.36
COL6A6A6NMZ7 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A6A6NMZ7 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
COL6A6A6NMZ7 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A6A6NMZ7 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.28■□□□□ 0.36
COL6A6A6NMZ7 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A6A6NMZ7 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
COL6A6A6NMZ7 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A6A6NMZ7 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A6A6NMZ7 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A6A6NMZ7 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A6A6NMZ7 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC17.28■□□□□ 0.36
COL6A6A6NMZ7 AF238378.1-201ENST00000526806 358 ntBASIC17.28■□□□□ 0.36
COL6A6A6NMZ7 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.28■□□□□ 0.36
COL6A6A6NMZ7 SMG8-203ENST00000578922 2178 ntBASIC17.28■□□□□ 0.36
COL6A6A6NMZ7 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A6A6NMZ7 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC17.28■□□□□ 0.36
COL6A6A6NMZ7 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A6A6NMZ7 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC17.28■□□□□ 0.36
COL6A6A6NMZ7 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC17.28■□□□□ 0.36
COL6A6A6NMZ7 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.28■□□□□ 0.36
COL6A6A6NMZ7 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
COL6A6A6NMZ7 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC17.27■□□□□ 0.36
COL6A6A6NMZ7 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL6A6A6NMZ7 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL6A6A6NMZ7 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC17.27■□□□□ 0.36
COL6A6A6NMZ7 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL6A6A6NMZ7 AC073648.2-201ENST00000510116 352 ntBASIC17.27■□□□□ 0.36
COL6A6A6NMZ7 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
COL6A6A6NMZ7 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL6A6A6NMZ7 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL6A6A6NMZ7 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL6A6A6NMZ7 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL6A6A6NMZ7 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL6A6A6NMZ7 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC17.27■□□□□ 0.36
COL6A6A6NMZ7 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL6A6A6NMZ7 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC17.27■□□□□ 0.36
COL6A6A6NMZ7 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL6A6A6NMZ7 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC17.27■□□□□ 0.36
COL6A6A6NMZ7 AL117328.2-201ENST00000624617 1940 ntBASIC17.27■□□□□ 0.35
COL6A6A6NMZ7 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL6A6A6NMZ7 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
COL6A6A6NMZ7 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL6A6A6NMZ7 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL6A6A6NMZ7 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC17.27■□□□□ 0.35
COL6A6A6NMZ7 SEC1P-202ENST00000473944 940 ntBASIC17.27■□□□□ 0.35
COL6A6A6NMZ7 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC17.27■□□□□ 0.35
COL6A6A6NMZ7 AP001160.2-201ENST00000596071 487 ntBASIC17.27■□□□□ 0.35
COL6A6A6NMZ7 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.27■□□□□ 0.35
COL6A6A6NMZ7 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
COL6A6A6NMZ7 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL6A6A6NMZ7 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
COL6A6A6NMZ7 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
COL6A6A6NMZ7 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL6A6A6NMZ7 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC17.26■□□□□ 0.35
COL6A6A6NMZ7 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL6A6A6NMZ7 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
COL6A6A6NMZ7 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL6A6A6NMZ7 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
COL6A6A6NMZ7 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL6A6A6NMZ7 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms