Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC33.33■■■□□ 2.93
CCDC88BA6NC98 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC33.33■■■□□ 2.93
CCDC88BA6NC98 GOLGA6L5P-202ENST00000515341 1828 ntBASIC33.33■■■□□ 2.93
CCDC88BA6NC98 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC33.33■■■□□ 2.93
CCDC88BA6NC98 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC33.33■■■□□ 2.93
CCDC88BA6NC98 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC33.33■■■□□ 2.93
CCDC88BA6NC98 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC33.32■■■□□ 2.93
CCDC88BA6NC98 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC33.32■■■□□ 2.93
CCDC88BA6NC98 AC007375.3-201ENST00000600936 2314 ntBASIC33.32■■■□□ 2.93
CCDC88BA6NC98 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC33.32■■■□□ 2.92
CCDC88BA6NC98 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC33.32■■■□□ 2.92
CCDC88BA6NC98 AC034232.1-201ENST00000506026 1064 ntBASIC33.32■■■□□ 2.92
CCDC88BA6NC98 SDHD-206ENST00000528182 754 ntTSL 3 BASIC33.32■■■□□ 2.92
CCDC88BA6NC98 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC33.32■■■□□ 2.92
CCDC88BA6NC98 RN7SL510P-201ENST00000581311 263 ntBASIC33.32■■■□□ 2.92
CCDC88BA6NC98 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC33.32■■■□□ 2.92
CCDC88BA6NC98 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC33.32■■■□□ 2.92
CCDC88BA6NC98 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC33.32■■■□□ 2.92
CCDC88BA6NC98 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC33.32■■■□□ 2.92
CCDC88BA6NC98 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC33.32■■■□□ 2.92
CCDC88BA6NC98 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC33.32■■■□□ 2.92
CCDC88BA6NC98 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC33.32■■■□□ 2.92
CCDC88BA6NC98 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC33.31■■■□□ 2.92
CCDC88BA6NC98 FDX1P1-201ENST00000449115 551 ntBASIC33.31■■■□□ 2.92
CCDC88BA6NC98 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC33.31■■■□□ 2.92
CCDC88BA6NC98 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC33.31■■■□□ 2.92
CCDC88BA6NC98 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC33.31■■■□□ 2.92
CCDC88BA6NC98 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC33.31■■■□□ 2.92
CCDC88BA6NC98 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC33.31■■■□□ 2.92
CCDC88BA6NC98 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC33.31■■■□□ 2.92
CCDC88BA6NC98 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC33.31■■■□□ 2.92
CCDC88BA6NC98 PVRIG2P-201ENST00000435460 978 ntBASIC33.31■■■□□ 2.92
CCDC88BA6NC98 TSSC2-201ENST00000450217 709 ntBASIC33.31■■■□□ 2.92
CCDC88BA6NC98 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC33.31■■■□□ 2.92
CCDC88BA6NC98 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC33.31■■■□□ 2.92
CCDC88BA6NC98 AC024243.1-201ENST00000609234 778 ntBASIC33.31■■■□□ 2.92
CCDC88BA6NC98 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC33.31■■■□□ 2.92
CCDC88BA6NC98 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC33.3■■■□□ 2.92
CCDC88BA6NC98 GAS2L1P1-201ENST00000420145 1480 ntBASIC33.3■■■□□ 2.92
CCDC88BA6NC98 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC33.3■■■□□ 2.92
CCDC88BA6NC98 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC33.3■■■□□ 2.92
CCDC88BA6NC98 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
CCDC88BA6NC98 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC33.3■■■□□ 2.92
CCDC88BA6NC98 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC33.3■■■□□ 2.92
CCDC88BA6NC98 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC33.3■■■□□ 2.92
CCDC88BA6NC98 HLA-F-220ENST00000434407 884 ntBASIC33.3■■■□□ 2.92
CCDC88BA6NC98 UNC93B7-201ENST00000509439 705 ntBASIC33.3■■■□□ 2.92
CCDC88BA6NC98 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC33.3■■■□□ 2.92
CCDC88BA6NC98 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC33.3■■■□□ 2.92
CCDC88BA6NC98 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
CCDC88BA6NC98 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
CCDC88BA6NC98 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC33.29■■■□□ 2.92
CCDC88BA6NC98 AC093525.10-201ENST00000625130 1569 ntBASIC33.29■■■□□ 2.92
CCDC88BA6NC98 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC33.29■■■□□ 2.92
CCDC88BA6NC98 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC33.29■■■□□ 2.92
CCDC88BA6NC98 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC33.29■■■□□ 2.92
CCDC88BA6NC98 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC33.28■■■□□ 2.92
CCDC88BA6NC98 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC33.28■■■□□ 2.92
CCDC88BA6NC98 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC33.28■■■□□ 2.92
CCDC88BA6NC98 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC33.28■■■□□ 2.92
CCDC88BA6NC98 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC33.28■■■□□ 2.92
CCDC88BA6NC98 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC33.28■■■□□ 2.92
CCDC88BA6NC98 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC33.28■■■□□ 2.92
CCDC88BA6NC98 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC33.28■■■□□ 2.92
CCDC88BA6NC98 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC33.28■■■□□ 2.92
CCDC88BA6NC98 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC33.28■■■□□ 2.92
CCDC88BA6NC98 MIR3652-201ENST00000579335 131 ntBASIC33.28■■■□□ 2.92
CCDC88BA6NC98 AC092329.2-201ENST00000598402 547 ntBASIC33.28■■■□□ 2.92
CCDC88BA6NC98 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC33.28■■■□□ 2.92
CCDC88BA6NC98 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC33.28■■■□□ 2.92
CCDC88BA6NC98 TCF3P1-201ENST00000423021 1937 ntBASIC33.28■■■□□ 2.92
CCDC88BA6NC98 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC33.27■■■□□ 2.92
CCDC88BA6NC98 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC33.27■■■□□ 2.92
CCDC88BA6NC98 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC33.27■■■□□ 2.92
CCDC88BA6NC98 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC33.27■■■□□ 2.92
CCDC88BA6NC98 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC33.27■■■□□ 2.92
CCDC88BA6NC98 AC011498.5-201ENST00000592027 486 ntBASIC33.27■■■□□ 2.92
CCDC88BA6NC98 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
CCDC88BA6NC98 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
CCDC88BA6NC98 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
CCDC88BA6NC98 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC33.27■■■□□ 2.92
CCDC88BA6NC98 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC33.27■■■□□ 2.92
CCDC88BA6NC98 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC33.26■■■□□ 2.92
CCDC88BA6NC98 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC33.26■■■□□ 2.92
CCDC88BA6NC98 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC33.26■■■□□ 2.92
CCDC88BA6NC98 PPIH-202ENST00000372549 327 ntTSL 3 BASIC33.26■■■□□ 2.92
CCDC88BA6NC98 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC33.26■■■□□ 2.92
CCDC88BA6NC98 PRELID1P1-202ENST00000567272 903 ntBASIC33.26■■■□□ 2.92
CCDC88BA6NC98 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC33.26■■■□□ 2.92
CCDC88BA6NC98 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC33.26■■■□□ 2.92
CCDC88BA6NC98 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC33.26■■■□□ 2.92
CCDC88BA6NC98 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC33.26■■■□□ 2.92
CCDC88BA6NC98 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC33.26■■■□□ 2.91
CCDC88BA6NC98 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC33.26■■■□□ 2.91
CCDC88BA6NC98 AL162741.1-201ENST00000565563 1558 ntBASIC33.26■■■□□ 2.91
CCDC88BA6NC98 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC33.26■■■□□ 2.91
CCDC88BA6NC98 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC33.26■■■□□ 2.91
CCDC88BA6NC98 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC33.26■■■□□ 2.91
CCDC88BA6NC98 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC33.26■■■□□ 2.91
CCDC88BA6NC98 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC33.26■■■□□ 2.91
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms