Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 Y_RNA.672-201ENST00000516289 104 ntBASIC6.15□□□□□ -1.42
CCDC9Q9Y3X0 SCARNA13-201ENST00000516672 275 ntBASIC6.15□□□□□ -1.42
CCDC9Q9Y3X0 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC6.15□□□□□ -1.42
CCDC9Q9Y3X0 AP000889.1-201ENST00000530968 660 ntBASIC6.15□□□□□ -1.42
CCDC9Q9Y3X0 AC027369.5-201ENST00000533838 755 ntBASIC6.15□□□□□ -1.42
CCDC9Q9Y3X0 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC6.15□□□□□ -1.42
CCDC9Q9Y3X0 AGGF1P4-201ENST00000568249 801 ntBASIC6.15□□□□□ -1.42
CCDC9Q9Y3X0 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC6.15□□□□□ -1.42
CCDC9Q9Y3X0 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC6.15□□□□□ -1.42
CCDC9Q9Y3X0 BX664608.1-201ENST00000610519 487 ntBASIC6.15□□□□□ -1.42
CCDC9Q9Y3X0 AC112484.5-201ENST00000624189 228 ntBASIC6.15□□□□□ -1.42
CCDC9Q9Y3X0 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC6.15□□□□□ -1.43
CCDC9Q9Y3X0 MAPK10-328ENST00000641553 4009 ntBASIC6.15□□□□□ -1.43
CCDC9Q9Y3X0 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC6.15□□□□□ -1.43
CCDC9Q9Y3X0 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC6.15□□□□□ -1.43
CCDC9Q9Y3X0 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC6.15□□□□□ -1.43
CCDC9Q9Y3X0 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
CCDC9Q9Y3X0 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 THAP12P5-201ENST00000405864 2275 ntBASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 SNORA71.3-201ENST00000362582 128 ntBASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 RNU5A-8P-201ENST00000364102 114 ntBASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 5S_rRNA.1-201ENST00000364415 116 ntBASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 RNY4P34-201ENST00000364779 95 ntBASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 EIF4EBP2P3-201ENST00000403144 334 ntBASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 RNU2-8P-201ENST00000410727 190 ntBASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 RPL21P66-201ENST00000426566 466 ntBASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 RPS6P12-201ENST00000432491 726 ntBASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 AC108059.3-201ENST00000456388 214 ntBASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 snoU13.4-201ENST00000458916 104 ntBASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 RNU7-59P-201ENST00000459101 61 ntBASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 KLF3P2-201ENST00000465138 268 ntBASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 MTCO2P32-201ENST00000514865 403 ntBASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 SNORA18.6-201ENST00000516792 115 ntBASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 AP003122.4-201ENST00000530980 758 ntBASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 MIR4528-201ENST00000577763 90 ntBASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 FAM60BP-201ENST00000578364 658 ntBASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 AC015871.2-201ENST00000603605 948 ntBASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 AC103710.1-201ENST00000610003 901 ntBASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 AC008498.1-201ENST00000613012 531 ntBASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 AC110994.2-201ENST00000635481 492 ntBASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 AL138713.1-201ENST00000624026 2130 ntBASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
CCDC9Q9Y3X0 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 GNG5P1-201ENST00000255500 204 ntBASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 RNU6-600P-201ENST00000362524 99 ntBASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 RNU1-132P-201ENST00000364300 164 ntBASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 RNU4-75P-201ENST00000364621 146 ntBASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 RNU4-65P-201ENST00000410473 140 ntBASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 RNU6-248P-201ENST00000410720 107 ntBASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 CRYBB2P1-203ENST00000415709 538 ntBASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 GCA-203ENST00000429691 824 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 AC079804.1-201ENST00000461922 436 ntBASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 AL132838.2-201ENST00000492041 314 ntBASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 AC006499.6-201ENST00000511169 607 ntBASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 RNA5SP497-201ENST00000516081 97 ntBASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 RAD21-204ENST00000518055 896 ntTSL 2 BASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 AP000857.1-201ENST00000532151 543 ntBASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 AL359219.2-201ENST00000555184 348 ntBASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 MIR4286-201ENST00000580651 93 ntBASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 AL139286.1-201ENST00000604465 483 ntBASIC6.13□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms